PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | LOC_Os04g51070.1 | ||||||||
Common Name | BHLH141, DTD, EAT1, LOC4336865, Os04g0599300, OsJ_16023, OSJNBa0083N12.3, OSJNba0093F12.24 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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Family | bHLH | ||||||||
Protein Properties | Length: 465aa MW: 51521.7 Da PI: 5.0441 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 35.7 | 1.6e-11 | 264 | 310 | 3 | 54 |
HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 +a+ + Er RR+++N +f +Lr l P++ +K++ a+i+ A+eYI +L LOC_Os04g51070.1 264 KANFATERERREQLNVKFRTLRMLFPNP-----TKNDRASIVGDAIEYIDEL 310 68899***********************.....9***************998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 13.598 | 261 | 310 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 1.1E-8 | 264 | 310 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 3.16E-12 | 264 | 328 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 4.5E-8 | 267 | 316 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 1.6E-10 | 268 | 323 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 2.71E-8 | 270 | 315 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009555 | Biological Process | pollen development | ||||
GO:0048658 | Biological Process | anther wall tapetum development | ||||
GO:0052543 | Biological Process | callose deposition in cell wall | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Plant Ontology ? help Back to Top | ||||||
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PO Term | PO Category | PO Description | ||||
PO:0009066 | anatomy | anther | ||||
PO:0001004 | developmental stage | anther development stage | ||||
PO:0007130 | developmental stage | sporophyte reproductive stage |
Sequence ? help Back to Top |
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Protein Sequence Length: 465 aa Download sequence Send to blast |
MIVGAGYFED SHDQSLMAGS LIHDSNQAPA SSENTSIDLQ KFKVHPYSTE ALSNTANLAE 60 AARAINHLQH QLEIDLEQEV PPVETANWDP AICTIPDHII NHQFSEDPQN ILVEQQIQQY 120 DSALYPNGVY TPAPDLLNLM QCTMAPAFPA TTSVFGDTTL NGTNYLDLNG ELTGVAAVPD 180 SGSGLMFASD SALQLGYHGT QSHLIKDICH SLPQNYGLFP SEDERDVIIG VGSGDLFQEI 240 DDRQFDSVLE CRRGKGEFGK GKGKANFATE RERREQLNVK FRTLRMLFPN PTKNDRASIV 300 GDAIEYIDEL NRTVKELKIL VEQKRHGNNR RKVLKLDQEA AADGESSSMR PVRDDQDNQL 360 HGAIRSSWVQ RRSKECHVDV RIVDDEVNIK LTEKKKANSL LHAAKVLDEF QLELIHVVGG 420 IIGDHHIFMF NTKVSEGSAV YACAVAKKLL QAVDVQHQAL DIFN* |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Os.49995 | 0.0 | panicle |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | E-value | ||||
GEO | 37989132 | 0.0 | ||||
Expression Atlas | Q7X8R0 | - |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | DEVELOPMENTAL STAGE: Expressed in developing anthers from stage 8 to stage 10 (PubMed:23519457). Expressed in developing anthers from stage 7 to stage 11 with a peak at stages 8 and 9. Highly expressed in the tapetum (PubMed:23385589). {ECO:0000269|PubMed:23385589, ECO:0000269|PubMed:23519457}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor involved in the regulation of tapetum programmed cell death (PCD) and degradation during male reproductive development (PubMed:23519457, PubMed:23385589). Interacts with TDR and promote tapetal PCD by regulating the expression of RTS, and the two lipid-transfer proteins C4 and C6, which function in microspore development (PubMed:23519457). Acts downstream from and interacts with TDR in the regulation of tapetal PCD. Regulates directly the aspartic protease AP25 and AP37 during tapetal PCD (PubMed:23385589). May not target the cysteine protease CP1 (PubMed:23519457, PubMed:23385589). {ECO:0000269|PubMed:23385589, ECO:0000269|PubMed:23519457}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | LOC_Os04g51070.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Phenotype -- Disruption Phenotype ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | DISRUPTION PHENOTYPE: Male sterility due to failure of tapetum programmed cell death (PCD) and degeneration required for pollen maturation (PubMed:23519457). Male sterility due to delayed tapetal PCD and aborted pollen development (PubMed:23385589). {ECO:0000269|PubMed:23385589, ECO:0000269|PubMed:23519457}. |
Phenotype -- Mutation ? help Back to Top | ||||||
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Source | ID | |||||
RiceGE | Os04g51070 |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK119509 | 0.0 | AK119509.1 Oryza sativa Japonica Group cDNA clone:001-134-F08, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015634639.1 | 0.0 | transcription factor EAT1 | ||||
Refseq | XP_015634640.1 | 0.0 | transcription factor EAT1 | ||||
Refseq | XP_015634641.1 | 0.0 | transcription factor EAT1 | ||||
Swissprot | Q7X8R0 | 0.0 | EAT1_ORYSJ; Transcription factor EAT1 | ||||
TrEMBL | A0A0E0PDK5 | 0.0 | A0A0E0PDK5_ORYRU; Uncharacterized protein | ||||
STRING | ORUFI04G25690.1 | 0.0 | (Oryza rufipogon) | ||||
STRING | OS04T0599300-01 | 0.0 | (Oryza sativa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1904 | 37 | 96 | Representative plant | OGRP2659 | 14 | 31 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G31210.1 | 3e-56 | bHLH family protein |
Link Out ? help Back to Top | |
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Phytozome | LOC_Os04g51070.1 |
Entrez Gene | 4336865 |
Publications ? help Back to Top | |||
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