PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LOC_Os04g50920.1
Common NameOSJNba0093F12.9
Organism
Oryza sativa subsp. japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family WRKY
Protein Properties Length: 515aa    MW: 53042.3 Da    PI: 5.3217
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LOC_Os04g50920.1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY97.58.8e-31263321259
                       --SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
              WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                       +D ++WrKYGqK++kgs++pr+YYrC+s+ gC+++k+vers++dp++++itY++eHnh+
  LOC_Os04g50920.1 263 SDLWAWRKYGQKPIKGSPYPRGYYRCSSSkGCSARKQVERSRTDPNMLVITYTSEHNHP 321
                       699************************998****************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5081133.109257323IPR003657WRKY domain
SuperFamilySSF1182903.66E-26260323IPR003657WRKY domain
Gene3DG3DSA:2.20.25.801.2E-30260323IPR003657WRKY domain
SMARTSM007741.4E-37262322IPR003657WRKY domain
PfamPF031061.2E-25264321IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 515 aa     Download sequence    Send to blast
MPPCVWGSHT PLSLLSPPAA WAGERMEGDQ AGGDLTDIVR AGGGAMPGSV VVDLPSTAAE  60
WQLPAEPMLF PPPPSLSSTT DGCGAGGAAG ADIFGGGGGD LFSGLVDPFS SDYSSGADFL  120
DAMPDAMAKV GFDTAVGGGC GGGGGGGGGS GGHLLDMSRK PLLPRGMPMA AVGGLAAPRV  180
MPSPLSPRAI RPYPPISAGD MMKLGITAGQ AAGCAIDAAV AGMQMSSPRS GGIKRRKNQA  240
RKVVCIPAPT AAGGRPSGEV VPSDLWAWRK YGQKPIKGSP YPRGYYRCSS SKGCSARKQV  300
ERSRTDPNML VITYTSEHNH PWPTQRNALA GSTRSHHSKN SGGGGGSGSK GSQNDKSQQQ  360
PSVKEEQKDQ ATTATTTTTS TITTTNSASP VVVKEEEAAL AGSSEALELE RVMDTTAAGV  420
VDHSELMDHV FSESYKPMIP ETGQPDDFFA DLAELESDPM SLIFSKEYME AKPSGGDHAQ  480
EKAMAKELDP FDMLDWSTTT NSSAGSSFEQ GKRG*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5w3x_B5e-25237324280Disease resistance protein RRS1
5w3x_D5e-25237324280Disease resistance protein RRS1
Search in ModeBase
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO1154602690.0
Expression AtlasQ7XNU9-
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00171DAPTransfer from AT1G30650Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapLOC_Os04g50920.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Phenotype -- Mutation ? help Back to Top
Source ID
RiceGEOs04g50920
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1109120.0AK110912.1 Oryza sativa Japonica Group cDNA clone:002-173-C03, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015634477.10.0probable WRKY transcription factor 4
TrEMBLQ7XNU90.0Q7XNU9_ORYSJ; OSJNba0093F12.9 protein
STRINGOBART04G23800.10.0(Oryza barthii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP25923888
Representative plantOGRP1417875
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G34830.17e-65WRKY DNA-binding protein 35