PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | LOC_Os04g50070.1 | ||||||||
Common Name | OSJNBa0086O06.19 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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Family | C2H2 | ||||||||
Protein Properties | Length: 194aa MW: 20592.3 Da PI: 9.2952 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 14.3 | 0.00012 | 71 | 93 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y+C C + F++ L H+++H LOC_Os04g50070.1 71 YTCAFCRREFRSAQALGGHMNVH 93 9********************99 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57667 | 3.08E-6 | 68 | 97 | No hit | No description |
PROSITE profile | PS50157 | 11.011 | 71 | 98 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 73 | 93 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding | ||||
GO:0044212 | Molecular Function | transcription regulatory region DNA binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 194 aa Download sequence Send to blast |
MAPTSSTEEV KHLTLHHLLK RQHRLKPAAV VWRWPTSVVP GGGAGRPPVP DEQLAADDVD 60 GLGGTWPPRS YTCAFCRREF RSAQALGGHM NVHRRDRAKM RGHGLHGAAG QQLGAAEAPA 120 AAAAARTEYA VALYPILNSG AGGAAVRIPH GDVLLSAPVA LAAARRGHDH RCIDVGDDEN 180 DKKIDLELRL GWP* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1njq_A | 2e-13 | 66 | 93 | 2 | 29 | superman protein |
2l1o_A | 2e-13 | 66 | 93 | 2 | 29 | Transcriptional regulator SUPERMAN |
Search in ModeBase |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | |||||
Expression Atlas | Q7XLZ0 |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | LOC_Os04g50070.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Phenotype -- Mutation ? help Back to Top | ||||||
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Source | ID | |||||
RiceGE | Os04g50070 |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AL662981 | 0.0 | AL662981.3 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0086O06, complete sequence. | |||
GenBank | AP014960 | 0.0 | AP014960.1 Oryza sativa Japonica Group DNA, chromosome 4, cultivar: Nipponbare, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025880752.1 | 1e-138 | uncharacterized protein LOC112938737 | ||||
TrEMBL | Q7XLZ0 | 1e-136 | Q7XLZ0_ORYSJ; OSJNBa0086O06.19 protein | ||||
STRING | ORGLA04G0200100.1 | 1e-136 | (Oryza glaberrima) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP11852 | 26 | 33 | Representative plant | OGRP576 | 15 | 81 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G37740.1 | 8e-22 | zinc-finger protein 10 |
Link Out ? help Back to Top | |
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Phytozome | LOC_Os04g50070.1 |