PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LOC_Os04g49380.1
Common NameOSJNBa0088A01.14
Organism
Oryza sativa subsp. japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family FAR1
Protein Properties Length: 1006aa    MW: 116865 Da    PI: 8.1392
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LOC_Os04g49380.1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR183.34.1e-26473571191
              FAR1   1 kfYneYAkevGFsvrkskskks...krngeitkrtfvCskegkreeekkk......tekerrtraetrtgCkaklkvkkekdgkwevtklele 84 
                       +f+n+YA  +GFsv+++++++s   krnge+++ tf+C+++gk+++e+++       + er++++ + t+C++ l+++k+ +  w++t+++l+
  LOC_Os04g49380.1 473 DFFNFYALLAGFSVVIAHNYHStskKRNGEVIRVTFKCNRHGKAKSESQEeeteetVVAERNNNEIKATSCNCALVISKR-NLIWRITRVNLD 564
                       6********************99999*******************99999899888888999******************.************ PP

              FAR1  85 HnHelap 91 
                       HnH+++p
  LOC_Os04g49380.1 565 HNHKMSP 571
                       ****975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031012.3E-25473571IPR004330FAR1 DNA binding domain
PROSITE profilePS5096610.423884920IPR007527Zinc finger, SWIM-type
PfamPF044348.6E-5885920IPR007527Zinc finger, SWIM-type
SMARTSM005751.4E-6895922IPR006564Zinc finger, PMZ-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 1006 aa     Download sequence    Send to blast
MELEEEKDPP KHQSKIKMNS AEIKKRKIGL GKDQGSEKKE MSGKNIKSIK ETGTKGQSKE  60
LQKKESKSRK STKDKSKKNK DMTQVPTNAE EFHKEYTTKV IRKESRTDSS SIEQVIGTSS  120
IQEMETNEQV KSKDTSKDMT QVPANAEGIR KEYTTKVNRQ ESRTGNKDNG QSGRSISLNT  180
KKDVNLKYKD DGLILGKAKI FSKYHSEITY YIFNFYEAGR SISLDTGNKD NKDAERSIHP  240
GNIQNMTQLV LTEHNANTLI LGISNELSQE EISINDNMKL NREKTNSSDE YNNCTLHDEW  300
SLLGAQIFSY TSLMEQIISS QPSISEVQQE ISTESNFVAT PRAFQNSMIL TTSRTEDIPF  360
DMDYANTNQV EDEDLEDNEL ENWNLDMFNL SNGQNVQNSA DNSTEIGNQA TTNVDTVESN  420
DSDANGEMLT EEDINNFLEQ EQEEATKGNN AAIDAKYIPR VDMQFKSIKE AHDFFNFYAL  480
LAGFSVVIAH NYHSTSKKRN GEVIRVTFKC NRHGKAKSES QEEETEETVV AERNNNEIKA  540
TSCNCALVIS KRNLIWRITR VNLDHNHKMS PRDKVRFLKS HKNMTTEEKM MIRTLKECNI  600
PTRHMIVILS TLRGGLTSLP YTKKDVSNVR TCINKETSSN DMMQVLQFFR KKKEKDPKFF  660
YEFDLDENKK VTNLFWTDGR SIDWNCFFHI VRKAFNLSGT LFKSKEGLYD EYEDIMNNSV  720
TEEEFEYLWN EMVDSYEVQH INFLKHMWSI RKRFIPVYFK TNFCPFIKST ALSEGTNSRF  780
KKDVGPQYSI ISFLIEYVRV MDTIQNLEQL DDHNSRTKRP SKLWSHYYIE YQAVKLYNSK  840
IFKKFQVELK RTTRLQLIEV EKLKTYKVFL ALNQKIKVVR RRNYLVIVDS EKEEYTCICS  900
KFEKDGLLCS HILKIMLHLN IMKIPKKYII DRWRKKDYKE KYDFEDRIIP LSESSVLRFN  960
ILSRKCAEIA SQGSKSIDSF QFAVDQIDKL EKELISMNSE QRTKQ*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1649654RKKKEK
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Os.787600.0callus
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO2976012660.0
Expression AtlasQ7XUD2-
Cis-element ? help Back to Top
SourceLink
PlantRegMapLOC_Os04g49380.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Phenotype -- Mutation ? help Back to Top
Source ID
RiceGEOs04g49380
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAL6629870.0AL662987.3 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0088A01, complete sequence.
GenBankAP0149600.0AP014960.1 Oryza sativa Japonica Group DNA, chromosome 4, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLQ7XUD20.0Q7XUD2_ORYSJ; OSJNBa0088A01.14 protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP1533535
Representative plantOGRP3012351
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G19990.11e-28FAR1-related sequence 1