PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | LOC_Os04g48510.1 | ||||||||
Common Name | GRF12, LOC4336731, Os04g0574500, OsJ_15856, OSJNBa0019K04.18 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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Family | GRF | ||||||||
Protein Properties | Length: 237aa MW: 24970.6 Da PI: 10.24 | ||||||||
Description | GRF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRC | 79.9 | 2.3e-25 | 140 | 184 | 1 | 45 |
WRC 1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkskee 45 ++epgrCrRtDGKkWRCsr+v++g+k+CErH+hrgr rsrk++e+ LOC_Os04g48510.1 140 EPEPGRCRRTDGKKWRCSRDVVPGHKYCERHVHRGRGRSRKPMEA 184 69***************************************9987 PP | |||||||
2 | QLQ | 54.2 | 4.5e-19 | 73 | 109 | 1 | 37 |
QLQ 1 saFTaaQlqlLksQilAyKyLaanqPvPpeLlqaiqk 37 sa+T +Q q+L++Q+l+y+y+aa++PvP +L+++i+k LOC_Os04g48510.1 73 SALTFMQRQELEQQVLIYRYFAAGAPVPVHLVLPIWK 109 799*********************************7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00951 | 6.1E-6 | 73 | 109 | IPR014978 | Glutamine-Leucine-Glutamine, QLQ |
Pfam | PF08880 | 3.4E-11 | 74 | 108 | IPR014978 | Glutamine-Leucine-Glutamine, QLQ |
PROSITE profile | PS51666 | 21.217 | 74 | 109 | IPR014978 | Glutamine-Leucine-Glutamine, QLQ |
PROSITE profile | PS51667 | 25.072 | 140 | 184 | IPR014977 | WRC domain |
Pfam | PF08879 | 9.3E-21 | 141 | 182 | IPR014977 | WRC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005524 | Molecular Function | ATP binding |
Plant Ontology ? help Back to Top | ||||||
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PO Term | PO Category | PO Description | ||||
PO:0009047 | anatomy | stem | ||||
PO:0007010 | developmental stage | whole plant fruit ripening stage | ||||
PO:0007130 | developmental stage | sporophyte reproductive stage |
Sequence ? help Back to Top |
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Protein Sequence Length: 237 aa Download sequence Send to blast |
MLAEGRQVYL PPPPPSKLPR LSGTDPTDGV VTMAAPSPLV LGLGLGLGGS GSDSSGSDAE 60 ASAATVREAR PPSALTFMQR QELEQQVLIY RYFAAGAPVP VHLVLPIWKS IAAASSFGPQ 120 SFPSLTGLGS LCFDYRSSME PEPGRCRRTD GKKWRCSRDV VPGHKYCERH VHRGRGRSRK 180 PMEASAAVAP TYLPVRPALH TVATLATSAP SLSHLGFSSA SKVLLAHTTT GTTRAT* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 173 | 181 | GRGRSRKPM |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Os.57111 | 0.0 | callus |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | E-value | ||||
GEO | 32996143 | 0.0 | ||||
Expression Atlas | Q6AWX7 | - |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator that plays a regulatory role in gibberellin-induced stem elongation. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | LOC_Os04g48510.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Phenotype -- Mutation ? help Back to Top | ||||||
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Source | ID | |||||
RiceGE | Os04g48510 |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK110934 | 0.0 | AK110934.1 Oryza sativa Japonica Group cDNA clone:002-173-G02, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015635359.1 | 1e-170 | growth-regulating factor 12 | ||||
Swissprot | Q6AWX7 | 1e-171 | GRF12_ORYSJ; Growth-regulating factor 12 | ||||
TrEMBL | A0A0E0PCZ4 | 1e-168 | A0A0E0PCZ4_ORYRU; Uncharacterized protein | ||||
STRING | ORUFI04G24060.1 | 1e-169 | (Oryza rufipogon) | ||||
STRING | OS04T0574500-01 | 1e-169 | (Oryza sativa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP6221 | 30 | 51 | Representative plant | OGRP460 | 16 | 84 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G36400.1 | 2e-37 | growth-regulating factor 3 |
Link Out ? help Back to Top | |
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Phytozome | LOC_Os04g48510.1 |
Entrez Gene | 4336731 |
Publications ? help Back to Top | |||
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