PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | LOC_Os04g48070.1 | ||||||||
Common Name | GL2-4, LOC4336705, Os04g0569100, OSJNBb0032E06.7, ROC4 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
|
||||||||
Family | HD-ZIP | ||||||||
Protein Properties | Length: 814aa MW: 86758 Da PI: 5.7216 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 70.9 | 1.5e-22 | 105 | 160 | 1 | 56 |
TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 +++ +++t++q++eLe++F+++++p++++r+eL+k+lgL+ rqVk+WFqNrR+++k LOC_Os04g48070.1 105 KKRYHRHTPQQIQELEAMFKECPHPDEKQRAELSKRLGLEPRQVKFWFQNRRTQMK 160 688999***********************************************998 PP | |||||||
2 | START | 152 | 5.1e-48 | 316 | 556 | 2 | 206 |
HHHHHHHHHHHHHHHC-TT-EEEE........EXCCTTEEEEEEESSS......SCEEEEEEEECCSCH.HHHHHHHHCCCGGCT-TT-S... CS START 2 laeeaaqelvkkalaeepgWvkss........esengdevlqkfeeskv.....dsgealrasgvvdmv.lallveellddkeqWdetla... 77 la +a++elvk+a+ ++p+W + es+n +e+l +f++ + + +ea+r+sg+v+ + a lve+l+d + +W+ ++ LOC_Os04g48070.1 316 LAMSAMDELVKMAQMGDPLWIPGAsvpsspakESLNFEEYLNTFPPCIGvkpegYVSEASRESGIVIIDdGAALVETLMDER-RWSDMFScmi 407 67899***************9766667999****************9999**************998651558*********.********** PP .EEEEEEEECTT.............EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--......-TTSEE-EESSE CS START 78 .kaetlevissg.............galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppe.....sssvvRaellpS 150 ka+t+e is+g + +m+aelq+lsplvp R++ f+R+++ql +g+w++vdvS d+ + s + +++lpS LOC_Os04g48070.1 408 aKASTTEEISTGvagsrngalllvsDEHSVMQAELQVLSPLVPiREVKFLRFSKQLADGVWAVVDVSADELMRDQGitsasSTANMNCRRLPS 500 ******************99999999999***************************************9987666666454555689****** PP EEEEEEECTCEEEEEEEE-EE--SSXXHHHHHHHHHHHHHHHHHHHHHHTXXXXXX CS START 151 giliepksnghskvtwvehvdlkgrlphwllrslvksglaegaktwvatlqrqcek 206 g+++++++ng kvtwveh++++++++h l+r+l++sgla ga +w atlqrqce+ LOC_Os04g48070.1 501 GCVLQDTPNGFVKVTWVEHTEYDEASVHPLYRPLLRSGLALGAGRWIATLQRQCEC 556 ******************************************************96 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 7.94E-22 | 89 | 160 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 2.0E-24 | 91 | 162 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 18.366 | 102 | 162 | IPR001356 | Homeobox domain |
SMART | SM00389 | 3.2E-20 | 103 | 166 | IPR001356 | Homeobox domain |
CDD | cd00086 | 1.13E-20 | 104 | 160 | No hit | No description |
Pfam | PF00046 | 7.5E-20 | 105 | 160 | IPR001356 | Homeobox domain |
PRINTS | PR00031 | 8.7E-5 | 133 | 142 | IPR000047 | Helix-turn-helix motif |
PROSITE pattern | PS00027 | 0 | 137 | 160 | IPR017970 | Homeobox, conserved site |
PRINTS | PR00031 | 8.7E-5 | 142 | 158 | IPR000047 | Helix-turn-helix motif |
PROSITE profile | PS50848 | 41.854 | 306 | 559 | IPR002913 | START domain |
SuperFamily | SSF55961 | 2.2E-23 | 309 | 556 | No hit | No description |
CDD | cd08875 | 6.19E-103 | 310 | 555 | No hit | No description |
SMART | SM00234 | 4.2E-35 | 315 | 556 | IPR002913 | START domain |
Pfam | PF01852 | 9.1E-40 | 316 | 556 | IPR002913 | START domain |
SuperFamily | SSF55961 | 3.85E-17 | 576 | 778 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0008289 | Molecular Function | lipid binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Plant Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PO Term | PO Category | PO Description | ||||
PO:0009049 | anatomy | inflorescence | ||||
PO:0001083 | developmental stage | inflorescence development stage | ||||
PO:0007006 | developmental stage | IL.00 inflorescence just visible stage |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 814 aa Download sequence Send to blast |
MQFPFSGAGP GVFTSSPALS LALADAVAGR NSGGGGKMVT AAHGGVGGGG GGGRAKARDA 60 LEVENEMSRS GSDHLDVVSC GDAGGGGGDD DDDEDAEHGN PPKRKKRYHR HTPQQIQELE 120 AMFKECPHPD EKQRAELSKR LGLEPRQVKF WFQNRRTQMK MQLERHENSL LKQENDKLRS 180 ENLSIREATS NAVCVGCGGP AMLGEVSLEE HHLRVENARL KDELSRVCAL AAKFLGKSIS 240 VMAPPQMHQP HPVPGSSLEL AVGGIGSMPS ATMPISTITD FAGAMSSSMG TVITPMKSEA 300 EPSAMAGIDK SLFLELAMSA MDELVKMAQM GDPLWIPGAS VPSSPAKESL NFEEYLNTFP 360 PCIGVKPEGY VSEASRESGI VIIDDGAALV ETLMDERRWS DMFSCMIAKA STTEEISTGV 420 AGSRNGALLL VSDEHSVMQA ELQVLSPLVP IREVKFLRFS KQLADGVWAV VDVSADELMR 480 DQGITSASST ANMNCRRLPS GCVLQDTPNG FVKVTWVEHT EYDEASVHPL YRPLLRSGLA 540 LGAGRWIATL QRQCECLALL MSSIALPEND SSAIHPEGKR SMLKLARRMT DNFCAGVSTS 600 STREWSKLVG LTGNIGEDVH VMARKSVDEP GTPPGVVLSA ATSVWMPVMP ERLFNFLHNK 660 GLRAEWDILS NGGPMQEVTS IAKGQQNGNT VCLLKASPTK DKQNSMLILQ ETCADASGSM 720 VVYAPVDIPA MHLVMSGGDS SCVALLPSGF AILPAGPSIG ADHKMGGSLL TVAFQILANS 780 QPSAKLTVES VETVSNLISC TIKKIKTALH CDV* |
Expression -- UniGene ? help Back to Top | ||||||
---|---|---|---|---|---|---|
UniGene ID | E-value | Expressed in | ||||
Os.8833 | 0.0 | callus| flower| leaf| panicle |
Expression -- Microarray ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | ID | E-value | ||||
GEO | 37988762 | 0.0 | ||||
Expression Atlas | Q7Y0V9 | - |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Probable transcription factor. {ECO:0000250}. |
Function -- GeneRIF ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | LOC_Os04g48070.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Phenotype -- Mutation ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | ID | |||||
RiceGE | Os04g48070 |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | AB101647 | 0.0 | AB101647.1 Oryza sativa Japonica Group Roc4 mRNA for GL2-type homeodomain protein, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_015637147.1 | 0.0 | homeobox-leucine zipper protein ROC4 | ||||
Swissprot | Q7Y0V9 | 0.0 | ROC4_ORYSJ; Homeobox-leucine zipper protein ROC4 | ||||
TrEMBL | I1PNZ4 | 0.0 | I1PNZ4_ORYGL; Uncharacterized protein | ||||
STRING | ORGLA04G0191300.1 | 0.0 | (Oryza glaberrima) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1203 | 37 | 116 | Representative plant | OGRP145 | 15 | 136 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT4G00730.1 | 0.0 | HD-ZIP family protein |
Link Out ? help Back to Top | |
---|---|
Phytozome | LOC_Os04g48070.1 |
Entrez Gene | 4336705 |
Publications ? help Back to Top | |||
---|---|---|---|
|