PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LOC_Os04g47860.6
Common NameOs04g0566400, OSNPB_040566400
Organism
Oryza sativa subsp. japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family C2H2
Protein Properties Length: 613aa    MW: 63743.3 Da    PI: 9.9362
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LOC_Os04g47860.6genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H217.11.5e-0596118123
                       EEETTTTEEESSHHHHHHHHHHT CS
           zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                       ++C+ C+k F r  nL+ H r H
  LOC_Os04g47860.6  96 FVCEVCNKGFQREQNLQLHRRGH 118
                       89*******************88 PP
2zf-C2H211.50.0009173195123
                       EEETTTTEEESSHHHHHHHHHHT CS
           zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                       +kC +C+k++  +s+ k H + +
  LOC_Os04g47860.6 173 WKCDKCSKRYAVQSDWKAHSKIC 195
                       58*****************9876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.608.5E-695118IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576671.24E-795118No hitNo description
SMARTSM003550.004196118IPR015880Zinc finger, C2H2-like
PfamPF121714.0E-596118IPR022755Zinc finger, double-stranded RNA binding
PROSITE profilePS5015711.09496118IPR007087Zinc finger, C2H2
PROSITE patternPS00028098118IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.604.2E-4161194IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576671.24E-7168193No hitNo description
SMARTSM00355140173193IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0020039anatomyleaf lamina
Sequence ? help Back to Top
Protein Sequence    Length: 613 aa     Download sequence    Send to blast
MASNSSAAAA AAFFGISRDG DQHDQIKPLI SHQQHQHQQQ QLAASLTGVA TAAPTAASSQ  60
GAPPAAPPAK KKRNLPDPDA EVIALSPKTL LATNRFVCEV CNKGFQREQN LQLHRRGHNL  120
PWKLKQKNPA QAQRRRVYLC PEPTCVHHDP ARALGDLTGI KKHFCRKHGE KKWKCDKCSK  180
RYAVQSDWKA HSKICGTREY RCDCGTLFSR RDSFITHRAF CDALAQESSR LPPTSLSSLT  240
SHLYGASNAG NMALSLSQVG SHLTTSLQDG GGHHHHPSPE LLRLGGAGGG GGAGGGSSIA  300
ARLDHLLSPS GASAFRPPQP AFFLNAAAAA AATGQDFGDD AGNGQHSFLQ AKPFHGLMQL  360
PDLQGNGAGG PGAPGPNLFN LGFFANNGNS SGSSHEHASQ GLMSNDQFSC GAGGGGGLTR  420
RRRGSPAVTS LVATMFLLQG STTIKRRCCR RCRRPALLQK AAQMGATSSA NGPGSMFRGF  480
VGSSPHMRPA AQHMDQSDAH LNDLMNSLAG GGVNAAAMFG GTNGGGVPGA GMFDPRLCDI  540
EHEVKFSQGG GGGGGAGAGT GDGTRDFLGV GGGGIVHGMS TPRGDHHQSS SDMSSLEAEM  600
KSASSFNGRR MP*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_C4e-33169235369Zinc finger protein JACKDAW
5b3h_F4e-33169235369Zinc finger protein JACKDAW
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Os.525650.0callus| flower| leaf| panicle| root| seed| stem
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO379903460.0
Expression AtlasA0A0P0WDK4-
Cis-element ? help Back to Top
SourceLink
PlantRegMapLOC_Os04g47860.6
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Phenotype -- Mutation ? help Back to Top
Source ID
RiceGEOs04g47860
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1207230.0AK120723.1 Oryza sativa Japonica Group cDNA clone:J023002I18, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001338648.10.0uncharacterized protein LOC542199
RefseqXP_008668634.10.0uncharacterized protein LOC542199 isoform X1
RefseqXP_008668635.10.0uncharacterized protein LOC542199 isoform X1
TrEMBLA0A0P0WDK40.0A0A0P0WDK4_ORYSJ; Os04g0566400 protein
STRINGOS04T0566400-020.0(Oryza sativa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G50700.11e-101indeterminate(ID)-domain 2