PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | LOC_Os04g47750.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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Family | MYB_related | ||||||||
Protein Properties | Length: 153aa MW: 16635.3 Da PI: 7.8941 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 23.4 | 1.3e-07 | 65 | 127 | 1 | 46 |
TSSS-HHHHHHHHHHHHHTTTT...........-HHHHHHHHT......TTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGgg...........tWktIartmg......kgRtlkqcksrwqk 46 r+ W++e+ ++lv a ++ Wk +a++ + +Rt+ qck++w++ LOC_Os04g47750.1 65 RMHWSKEDNLRLVSAWLNNSNDpingnskkgphYWKQVAEEYNtyapkgRKRTAMQCKNHWNS 127 688**********************************************99**********96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF13837 | 9.3E-9 | 65 | 129 | No hit | No description |
PROSITE profile | PS50090 | 6.969 | 65 | 129 | IPR017877 | Myb-like domain |
Gene3D | G3DSA:1.10.10.60 | 8.1E-7 | 65 | 128 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 8.13E-6 | 65 | 148 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 4.17E-4 | 68 | 128 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 153 aa Download sequence Send to blast |
MATGPSSPVG SAALFGVGGG SGSRCEDSAS PVTSPIAHAQ NTSKDPNGIE EWSDVCSDEE 60 NKCVRMHWSK EDNLRLVSAW LNNSNDPING NSKKGPHYWK QVAEEYNTYA PKGRKRTAMQ 120 CKNHWNSIST LVAKFHGCWS ELSKTYQSGR SD* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | LOC_Os04g47750.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Phenotype -- Mutation ? help Back to Top | ||||||
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Source | ID | |||||
RiceGE | Os04g47750 |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AL606628 | 0.0 | AL606628.3 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0017B10, complete sequence. | |||
GenBank | AP014960 | 0.0 | AP014960.1 Oryza sativa Japonica Group DNA, chromosome 4, cultivar: Nipponbare, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024316450.1 | 2e-36 | glutathione S-transferase T3-like | ||||
TrEMBL | A0A1W0W1T1 | 2e-69 | A0A1W0W1T1_SORBI; Uncharacterized protein | ||||
STRING | Pavir.J27647.1.p | 4e-71 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP449 | 6 | 10 | Representative plant | OGRP9257 | 2 | 2 |
Link Out ? help Back to Top | |
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Phytozome | LOC_Os04g47750.1 |