PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | LOC_Os04g47080.1 | ||||||||
Common Name | LOC4336636, Os04g0557800, OSJNBa0065O17.8, OSNPB_040557800 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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Family | bHLH | ||||||||
Protein Properties | Length: 575aa MW: 62407.3 Da PI: 4.6044 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 37.6 | 4e-12 | 398 | 445 | 3 | 55 |
HHHHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS HLH 3 rahnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 ++h + ErrRR+++N+ f L++++P+ +++Ka+iL +++ Y+k+L+ LOC_Os04g47080.1 398 KNHVMSERRRREKLNEMFLILKSVVPSiH------RVDKASILAETIAYLKELE 445 5899***********************66......9***************996 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF14215 | 3.9E-51 | 13 | 196 | IPR025610 | Transcription factor MYC/MYB N-terminal |
PROSITE profile | PS50888 | 15.599 | 395 | 444 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 5.89E-17 | 398 | 460 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 1.58E-14 | 398 | 449 | No hit | No description |
Gene3D | G3DSA:4.10.280.10 | 4.5E-16 | 399 | 454 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 1.6E-9 | 399 | 445 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 1.9E-14 | 401 | 450 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009957 | Biological Process | epidermal cell fate specification | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Plant Ontology ? help Back to Top | ||||||
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PO Term | PO Category | PO Description | ||||
PO:0020104 | anatomy | leaf sheath |
Sequence ? help Back to Top |
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Protein Sequence Length: 575 aa Download sequence Send to blast |
MEETPLPSGK NFRSQLAAAA RSINWTYAIF WSISTSRPGV LTWKDGFYNG EIKTRKITNS 60 MNLMADELVL QRSEQLRELY DSLLSGECGH RARRPVAALL PEDLGDTEWY YVVCMTYAFG 120 PRQGLPGKSF ASNEFVWLTN AQSADRKLFH RALIAKSASI KTIVCVPFIM HGVLELGTTD 180 PISEDPALVD RIAASFWDTP PRAAFSSEAG DADIVVFEDL DHGNAAVEAT TTTVPGEPHA 240 VAGGEVAECE PNSDNDLEQI TMDDIGELYS LCEELDVVRP LDDDSSSWAV ADPWSSFQLV 300 PTSSPAPDQA PAAEATDVDD VVVAALDSSS IDGSCRPSPS SFVAWKRTAD SDEVQAVPLI 360 SGEPPQKLLK KAVAGAGAWM NNGDSSAAAM TTQGSSIKNH VMSERRRREK LNEMFLILKS 420 VVPSIHRVDK ASILAETIAY LKELEKRVEE LESSSQPSPC PLETRSRRKC REITGKKVSA 480 GAKRKAPAPE VASDDDTDGE RRHCVSNVNV TIMDNKEVLL ELQCQWKELL MTRVFDAIKG 540 VSLDVLSVQA STSDGLLGLK IQAKFASSAA VEPG* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4rqw_A | 1e-21 | 24 | 196 | 23 | 192 | Transcription factor MYC3 |
4rqw_B | 1e-21 | 24 | 196 | 23 | 192 | Transcription factor MYC3 |
4rru_A | 2e-21 | 24 | 192 | 62 | 227 | Transcription factor MYC3 |
4rs9_A | 1e-21 | 24 | 196 | 23 | 192 | Transcription factor MYC3 |
4ywc_A | 2e-21 | 24 | 192 | 62 | 227 | Transcription factor MYC3 |
4ywc_B | 2e-21 | 24 | 192 | 62 | 227 | Transcription factor MYC3 |
4yz6_A | 1e-21 | 24 | 196 | 23 | 192 | Transcription factor MYC3 |
5t0f_A | 2e-21 | 24 | 192 | 23 | 188 | Transcription factor MYC3 |
5t0q_A | 2e-21 | 24 | 192 | 23 | 188 | Transcription factor MYC3 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 403 | 408 | ERRRRE |
2 | 404 | 409 | RRRREK |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | E-value | ||||
GEO | 1086539 | 0.0 | ||||
Expression Atlas | Q7XPS3 | - |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Putative transcriptional activator. Control tissue-specific synthesis of anthocyanin pigments in various parts of the maize plant. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | LOC_Os04g47080.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Phenotype -- Mutation ? help Back to Top | ||||||
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Source | ID | |||||
RiceGE | Os04g47080 |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AB021079 | 0.0 | AB021079.1 Oryza sativa Plw-OSB1 mRNA for R-type basic helix-loop-helix protein, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015635227.1 | 0.0 | anthocyanin regulatory Lc protein isoform X4 | ||||
Swissprot | P13526 | 0.0 | ARLC_MAIZE; Anthocyanin regulatory Lc protein | ||||
TrEMBL | Q7XPS3 | 0.0 | Q7XPS3_ORYSJ; OSJNBa0065O17.8 protein | ||||
STRING | OS04T0557800-00 | 0.0 | (Oryza sativa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP932 | 33 | 109 | Representative plant | OGRP2447 | 14 | 29 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G63650.3 | 4e-62 | bHLH family protein |
Link Out ? help Back to Top | |
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Phytozome | LOC_Os04g47080.1 |
Entrez Gene | 4336636 |
Publications ? help Back to Top | |||
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