PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LOC_Os04g47059.1
Common NameOs04g0557500
Organism
Oryza sativa subsp. japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family bHLH
Protein Properties Length: 316aa    MW: 34254.1 Da    PI: 4.4055
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LOC_Os04g47059.1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH41.52.3e-13241287354
                       HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
               HLH   3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                       ++h + ErrRR+++N+ f  L++llP+      +K++Ka+iL +++ Y+k L
  LOC_Os04g47059.1 241 KSHVMSERRRREKLNEMFLILKSLLPSV-----RKVDKASILAETITYLKVL 287
                       5899***********************7.....6***************977 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF142152.5E-131862IPR025610Transcription factor MYC/MYB N-terminal
PROSITE profilePS5088816.063238287IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.96E-17241302IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000836.84E-16241292No hitNo description
PfamPF000108.4E-11242287IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.2E-16242299IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.9E-14244293IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0009047anatomystem
PO:0007010developmental stagewhole plant fruit ripening stage
PO:0007130developmental stagesporophyte reproductive stage
Sequence ? help Back to Top
Protein Sequence    Length: 316 aa     Download sequence    Send to blast
MQAIDLFGCA MLSLQIAKPF LRALLAKSAS IQTIVCIPFM SGVLELGTTD PVSEDPNLVN  60
RIVAYLKELQ FPICLEVPSS TPSPDETEDA DTVFDGLIEE DQMVILQGED ELGDVVVAEC  120
ETNGANPETI TMETDEFYSL CEELDLDLGS YQLVPTSARE TVAAAAAAAN DVDGVAYSHA  180
SCFVSWKRAN PAEKVVAVPM TAGIESQKLL KKAVGGGTAW MSNIDDRGSV AITTTPGSNI  240
KSHVMSERRR REKLNEMFLI LKSLLPSVRK VDKASILAET ITYLKVLEKR VKELESSSRE  300
PSRWRPTEIG QGKAP*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1246251ERRRRE
2247252RRRREK
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO154256280.0
Expression AtlasQ0JB42-
Cis-element ? help Back to Top
SourceLink
PlantRegMapLOC_Os04g47059.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Phenotype -- Mutation ? help Back to Top
Source ID
RiceGEOs04g47059
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB0210800.0AB021080.1 Oryza sativa Plw-OSB2 mRNA for R-type basic helix-loop-helix protein, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006653663.11e-109PREDICTED: anthocyanin regulatory R-S protein-like
RefseqXP_015692285.11e-109PREDICTED: anthocyanin regulatory R-S protein-like
TrEMBLQ0JB420.0Q0JB42_ORYSJ; Os04g0557500 protein
STRINGORGLA04G0183900.10.0(Oryza glaberrima)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP93233109
Representative plantOGRP24471429
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G09820.13e-25bHLH family protein