PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | LOC_Os04g46670.1 | ||||||||
Common Name | LOC4336604, Os04g0552400, OsJ_15712, OSNPB_040552400 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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Family | C2H2 | ||||||||
Protein Properties | Length: 571aa MW: 59626.8 Da PI: 5.5392 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 15.2 | 6.1e-05 | 124 | 141 | 2 | 19 |
EETTTTEEESSHHHHHHH CS zf-C2H2 2 kCpdCgksFsrksnLkrH 19 +C++Cgk F++++++ H LOC_Os04g46670.1 124 VCKNCGKEFTSWEHFLEH 141 7**************999 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50157 | 9.536 | 35 | 57 | IPR007087 | Zinc finger, C2H2 |
SuperFamily | SSF57667 | 2.22E-6 | 35 | 57 | No hit | No description |
SMART | SM00355 | 0.96 | 35 | 57 | IPR015880 | Zinc finger, C2H2-like |
Pfam | PF13912 | 0.0047 | 36 | 57 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 37 | 57 | IPR007087 | Zinc finger, C2H2 |
SuperFamily | SSF57667 | 2.22E-6 | 118 | 142 | No hit | No description |
SMART | SM00355 | 140 | 123 | 143 | IPR015880 | Zinc finger, C2H2-like |
PROSITE profile | PS50157 | 9.141 | 123 | 150 | IPR007087 | Zinc finger, C2H2 |
SuperFamily | SSF57667 | 8.28E-8 | 281 | 304 | No hit | No description |
Pfam | PF13912 | 3.2E-9 | 282 | 306 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.13 | 282 | 304 | IPR015880 | Zinc finger, C2H2-like |
PROSITE profile | PS50157 | 10.242 | 282 | 309 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 284 | 304 | IPR007087 | Zinc finger, C2H2 |
SuperFamily | SSF57667 | 8.28E-8 | 390 | 417 | No hit | No description |
Pfam | PF13912 | 4.8E-11 | 395 | 418 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 3.7 | 395 | 417 | IPR015880 | Zinc finger, C2H2-like |
PROSITE profile | PS50157 | 9.182 | 395 | 417 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 397 | 417 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0048235 | Biological Process | pollen sperm cell differentiation | ||||
GO:0046872 | Molecular Function | metal ion binding |
Plant Ontology ? help Back to Top | ||||||
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PO Term | PO Category | PO Description | ||||
PO:0025281 | anatomy | pollen | ||||
PO:0001015 | developmental stage | K second mitotic division stage | ||||
PO:0007130 | developmental stage | sporophyte reproductive stage |
Sequence ? help Back to Top |
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Protein Sequence Length: 571 aa Download sequence Send to blast |
MCESSPSLHH GQMQPSPSSP RAPPPTAAQA SGYKHFCRVC NKGFTCGSAL GGHMRAHGVG 60 DGDGLGADDD DDDDDDSLGD EAVRRARGGA DDPWNAGGPS SSGAATHVYE LRTNPNRVTR 120 SRQVCKNCGK EFTSWEHFLE HGKCSSGEDD DDEDDVDHSL QPWSPSPEAD GEEDSAPAAG 180 WLKGKRSRRC KGTGVDLSPT PSACAAGEEE DLANCLVMLS SSKVDQAGVT EAEQRSSSSA 240 SKEHKRLITF MEPTTYVLDT VMALPPPAPA PQYVSTVPRG MFECKACKKV FSSHQALGGH 300 RASHKKVKGC FAAKLESNAA EVAEPSHHAE VADRSEDNPA KATSDARRNV HASIDGDGNA 360 GTSDAAAELS MAIVPIEPPV AALAAAPLKK KGKMHECSVC HRLFTSGQAL GGHKRCHWLT 420 SSSADHTASV PPLADDLVPL SFRPMLDAPE PALDLSIAAN PPLLASAATV RPKVGGSSFH 480 LDAPPPVYIP SSPAIPSQRN KATATTGSQN ANDAVGLSTA AAEDEADSTT VKRARLSDLK 540 DVSMAGETTP WLQVGIGSSS RGGADDNDKE * |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 387 | 393 | LKKKGKM |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Os.52858 | 0.0 | flower| panicle |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | E-value | ||||
GEO | 32979647 | 0.0 | ||||
Expression Atlas | B9FGH7 | - |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00621 | PBM | Transfer from AT2G17180 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | LOC_Os04g46670.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Phenotype -- Mutation ? help Back to Top | ||||||
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Source | ID | |||||
RiceGE | Os04g46670 |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK069623 | 0.0 | AK069623.1 Oryza sativa Japonica Group cDNA clone:J023023M18, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015634601.1 | 0.0 | uncharacterized protein LOC4336604 | ||||
TrEMBL | B9FGH7 | 0.0 | B9FGH7_ORYSJ; Os04g0552400 protein | ||||
STRING | OS04T0552400-01 | 0.0 | (Oryza sativa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP3524 | 32 | 62 | Representative plant | OGRP2521 | 8 | 20 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G17180.1 | 6e-21 | C2H2-like zinc finger protein |
Link Out ? help Back to Top | |
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Phytozome | LOC_Os04g46670.1 |
Entrez Gene | 4336604 |