PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LOC_Os04g46440.1
Common NameLOC4336587, Os04g0550200, OSJNBb0034G17.6, OSNPB_040550200
Organism
Oryza sativa subsp. japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family ERF
Protein Properties Length: 218aa    MW: 23014.6 Da    PI: 5.2825
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LOC_Os04g46440.1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP258.91.2e-184695255
               AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                       y+GVr ++ +g+Wv+eIr+p++   + r++lg+f tae+Aa+a++ a+++++g
  LOC_Os04g46440.1 46 TYRGVRMRS-WGKWVSEIREPRK---KSRIWLGTFATAEMAARAHDVAALAIKG 95
                      69****998.**********843...6***********************9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541715.82E-2246104IPR016177DNA-binding domain
PROSITE profilePS5103222.98546103IPR001471AP2/ERF domain
PfamPF008471.8E-124695IPR001471AP2/ERF domain
SMARTSM003801.0E-3646109IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.1E-3246104IPR001471AP2/ERF domain
CDDcd000181.40E-3147105No hitNo description
PRINTSPR003679.3E-114758IPR001471AP2/ERF domain
PRINTSPR003679.3E-116985IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0009037anatomylemma
PO:0001047developmental stagelemma development stage
PO:0007130developmental stagesporophyte reproductive stage
Sequence ? help Back to Top
Protein Sequence    Length: 218 aa     Download sequence    Send to blast
MDDSHDLASP TSPDTASSSS SSTSTSSSSA TVAPKKRPRN DGRHPTYRGV RMRSWGKWVS  60
EIREPRKKSR IWLGTFATAE MAARAHDVAA LAIKGRTAHL NFPDLAHLLP RPATAAPKDV  120
QAAALLAAAA ADFPSVSVDA NAKSPDTCSV ASAASPQPPP PDAEADPDST LFDLPDLLLD  180
LRYETSSSLS CGASWAVDDD VAGGVVFRLE EPMLWDY*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A2e-17441031272Ethylene-responsive transcription factor ERF096
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Os.556430.0root
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO329936820.0
Expression AtlasQ7XU26-
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapLOC_Os04g46440.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Phenotype -- Mutation ? help Back to Top
Source ID
RiceGEOs04g46440
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1084730.0AK108473.1 Oryza sativa Japonica Group cDNA clone:002-143-E08, full insert sequence.
GenBankAL6630000.0AL663000.4 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBb0034G17, complete sequence.
GenBankAP0149600.0AP014960.1 Oryza sativa Japonica Group DNA, chromosome 4, cultivar: Nipponbare, complete sequence.
GenBankAY2582820.0AY258282.1 Oryza sativa (japonica cultivar-group) CR251 transcription factor gene, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015634439.11e-153ethylene-responsive transcription factor ERF038
SwissprotQ8LBQ72e-49ERF34_ARATH; Ethylene-responsive transcription factor ERF034
TrEMBLA0A0D9ZNW91e-152A0A0D9ZNW9_9ORYZ; Uncharacterized protein
TrEMBLA0A0E0H3X41e-152A0A0E0H3X4_ORYNI; Uncharacterized protein
TrEMBLA2XW681e-152A2XW68_ORYSI; Uncharacterized protein
TrEMBLI1PNM11e-152I1PNM1_ORYGL; Uncharacterized protein
TrEMBLQ7XU261e-152Q7XU26_ORYSJ; OSJNBb0034G17.6 protein
STRINGOGLUM04G20790.11e-152(Oryza glumipatula)
STRINGOS04T0550200-011e-152(Oryza sativa)
STRINGONIVA04G19090.11e-152(Oryza nivara)
STRINGORGLA04G0179000.11e-152(Oryza glaberrima)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP15935354
Representative plantOGRP6161718
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G44940.11e-45ERF family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]