PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LOC_Os04g46410.1
Common NameOs04g0549800, OsJ_15690, OSJNBb0034G17.3, OSNPB_040549800
Organism
Oryza sativa subsp. japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family ERF
Protein Properties Length: 248aa    MW: 26202 Da    PI: 4.5625
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LOC_Os04g46410.1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2612.6e-1963112255
               AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                        y+GVr ++ +g+Wv+eIr+p++   + r++lg+f+tae+Aa+a++ a+++++g
  LOC_Os04g46410.1  63 TYRGVRMRS-WGKWVSEIREPRK---KSRIWLGTFDTAEMAARAHDVAALAIKG 112
                       69****998.**********843...6***********************9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.103.4E-3263121IPR001471AP2/ERF domain
PfamPF008475.3E-1363112IPR001471AP2/ERF domain
SMARTSM003801.6E-3563126IPR001471AP2/ERF domain
SuperFamilySSF541715.82E-2263121IPR016177DNA-binding domain
PROSITE profilePS5103222.98563120IPR001471AP2/ERF domain
CDDcd000181.24E-3264122No hitNo description
PRINTSPR003673.2E-116475IPR001471AP2/ERF domain
PRINTSPR003673.2E-1186102IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 248 aa     Download sequence    Send to blast
MEQEQVMSQE SNSCTCSSSS NDASSAACSS LNASSPSSVD SGSAGGGGGG KKRPRSDHLK  60
HPTYRGVRMR SWGKWVSEIR EPRKKSRIWL GTFDTAEMAA RAHDVAALAI KGRTVHLNFP  120
DLAHLLPRAA SASPKDVQAA AALAAATASP APALSPTPCH DVDAAADDEP EPAEPEQATA  180
PVCIVENGTL QQDGGTGLDY TYFTMPDALL EFGFTLPPPP PPYYCGSPWD DDADDFFFGE  240
PLVLWEH*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A1e-17601201172Ethylene-responsive transcription factor ERF096
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Os.506393e-89root
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO329940393e-89
Expression AtlasQ7XU23-
Cis-element ? help Back to Top
SourceLink
PlantRegMapLOC_Os04g46410.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Phenotype -- Mutation ? help Back to Top
Source ID
RiceGEOs04g46410
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0149600.0AP014960.1 Oryza sativa Japonica Group DNA, chromosome 4, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025880927.10.0ethylene-responsive transcription factor ERF039
TrEMBLQ7XU230.0Q7XU23_ORYSJ; OSJNBb0034G17.3 protein
STRINGOS04T0549800-000.0(Oryza sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP15935354
Representative plantOGRP6161718
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G35700.17e-43ERF family protein