PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LOC_Os04g46400.1
Common NameDREB, LOC4336585, Os04g0549700, OSJNBb0034G17.2, OSNPB_040549700
Organism
Oryza sativa subsp. japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family ERF
Protein Properties Length: 285aa    MW: 29618.3 Da    PI: 5.0673
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LOC_Os04g46400.1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP260.73.5e-19116166155
               AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                       + y+GVr+++ +g+Wv+eIr+p++   + r++lg+f tae+Aa+a++ a+++++g
  LOC_Os04g46400.1 116 PSYRGVRRRS-WGKWVSEIREPRK---KSRIWLGTFPTAEMAARAHDVAALAIKG 166
                       57*****887.**********843...6***********************9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008471.6E-13116166IPR001471AP2/ERF domain
CDDcd000185.93E-32116176No hitNo description
PROSITE profilePS5103224.289117174IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.9E-33117176IPR001471AP2/ERF domain
SuperFamilySSF541712.62E-22117176IPR016177DNA-binding domain
SMARTSM003801.0E-38117180IPR001471AP2/ERF domain
PRINTSPR003676.5E-11118129IPR001471AP2/ERF domain
PRINTSPR003676.5E-11140156IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0009047anatomystem
PO:0007010developmental stagewhole plant fruit ripening stage
PO:0007130developmental stagesporophyte reproductive stage
Sequence ? help Back to Top
Protein Sequence    Length: 285 aa     Download sequence    Send to blast
MEADASHTPT TSSSVSVSFS SSSLSTSSST SSLVDNGAQD RPKSSKPKHA AKKRKRAAAE  60
EPANAAHGAG EDTSSCSTDD NAAASGKAQA GGGGGGVDSS STCTAASAPR SGFKHPSYRG  120
VRRRSWGKWV SEIREPRKKS RIWLGTFPTA EMAARAHDVA ALAIKGRNAH LNFPDSAHEL  180
PRPESTSPAD IQAAAAKAAA EVRCEEESSP SSSPTAEQPE EEAACPDTVH ADGGQDNALF  240
DLPDLLLDLR DGLWWSPVWP AALAAEEYDG GDAVVLNEPL LWAE*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A8e-18112174972Ethylene-responsive transcription factor ERF096
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
14654PKHAAKKRK
25056AKKRKRA
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Os.549290.0panicle
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO329923280.0
Expression AtlasQ7XU22-
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapLOC_Os04g46400.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Phenotype -- Mutation ? help Back to Top
Source ID
RiceGEOs04g46400
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1071190.0AK107119.1 Oryza sativa Japonica Group cDNA clone:002-124-B03, full insert sequence.
GenBankAL6630000.0AL663000.4 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBb0034G17, complete sequence.
GenBankAP0149600.0AP014960.1 Oryza sativa Japonica Group DNA, chromosome 4, cultivar: Nipponbare, complete sequence.
GenBankAY1962090.0AY196209.1 Oryza sativa (japonica cultivar-group) transcription factor DREB (DREB) gene, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015635762.10.0ethylene-responsive transcription factor ERF038
SwissprotQ8LBQ74e-46ERF34_ARATH; Ethylene-responsive transcription factor ERF034
SwissprotQ9ZQP31e-46ERF38_ARATH; Ethylene-responsive transcription factor ERF038
TrEMBLA0A0E0PCC30.0A0A0E0PCC3_ORYRU; Uncharacterized protein
TrEMBLA0A0U1XP050.0A0A0U1XP05_ORYSI; Dehydration responsive element binding protein 4-2
TrEMBLQ7XU220.0Q7XU22_ORYSJ; AP2-EREBP transcription factor
STRINGORUFI04G22400.10.0(Oryza rufipogon)
STRINGOS04T0549700-010.0(Oryza sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP15935354
Representative plantOGRP6161718
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G44940.12e-42ERF family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]