PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LOC_Os04g46250.1
Common NameLOC4336573, Os04g0547600, OsJ_15674, OSJNBa0065H10.3, OSJNBa0079A21.18, OSNPB_040547600
Organism
Oryza sativa subsp. japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family ERF
Protein Properties Length: 329aa    MW: 34816.6 Da    PI: 5.2234
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LOC_Os04g46250.1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP262.96.7e-20138189256
               AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 
                       +y+GVr+++ +g+++AeIrdp+ +g   r++lg+++t+ eAa+a+++a+ +++g+
  LOC_Os04g46250.1 138 KYRGVRQRP-WGKFAAEIRDPKRRG--SRVWLGTYDTPVEAARAYDRAAFRMRGA 189
                       8********.**********96554..**************************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.102.7E-32137197IPR001471AP2/ERF domain
PROSITE profilePS5103224.144138196IPR001471AP2/ERF domain
SuperFamilySSF541711.37E-22138197IPR016177DNA-binding domain
PfamPF008471.6E-14138188IPR001471AP2/ERF domain
CDDcd000182.28E-29138197No hitNo description
SMARTSM003805.5E-37138202IPR001471AP2/ERF domain
PRINTSPR003672.0E-13139150IPR001471AP2/ERF domain
PRINTSPR003672.0E-13178198IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0009089anatomyendosperm
PO:0007042developmental stagewhole plant fruit formation stage
PO:0007633developmental stageendosperm development stage
Sequence ? help Back to Top
Protein Sequence    Length: 329 aa     Download sequence    Send to blast
MDFHHGDADD FALEFIREHL LGVDGATATA TEPADLEVVE PAAAYPPMSW QEQRQQEQHG  60
CHVELTDEHL ESAPAAEAAA AFRTAPAQPA AEVMIKFGGE PSPVRPSSSL TISLPPSSFG  120
SWASAAAPAA AAVEDFRKYR GVRQRPWGKF AAEIRDPKRR GSRVWLGTYD TPVEAARAYD  180
RAAFRMRGAK AILNFPNEVG TRGAELWAPP PPPPAHSAAA STTNKRKRQP SEDPDDGVEV  240
IGVVSKAVKT EAPTSNSSSL SSSLTSRDTT PATSSAGAEH AGAAAESSPA TPSSWSWEQY  300
WEALLGGLPP LSPLSPHPAL GFPQLTVN*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A2e-26137201468ATERF1
3gcc_A2e-26137201468ATERF1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Os.823520.0leaf| root
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO329943500.0
GEO334400250.0
Expression AtlasQ7XAD5-
Cis-element ? help Back to Top
SourceLink
PlantRegMapLOC_Os04g46250.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Phenotype -- Mutation ? help Back to Top
Source ID
RiceGEOs04g46250
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1091410.0AK109141.1 Oryza sativa Japonica Group cDNA clone:002-155-E09, full insert sequence.
GenBankAL6070060.0AL607006.4 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0079A21, complete sequence.
GenBankAL7316130.0AL731613.5 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0065H10, complete sequence.
GenBankAP0149600.0AP014960.1 Oryza sativa Japonica Group DNA, chromosome 4, cultivar: Nipponbare, complete sequence.
GenBankAY3393790.0AY339379.1 Oryza sativa (japonica cultivar-group) Ap26 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015635116.10.0ethylene-responsive transcription factor ERF105
TrEMBLA0A0E0PCA70.0A0A0E0PCA7_ORYRU; Uncharacterized protein
TrEMBLQ7XAD50.0Q7XAD5_ORYSJ; Ap26
STRINGORUFI04G22260.10.0(Oryza rufipogon)
STRINGOS04T0547600-010.0(Oryza sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP10337465
Representative plantOGRP6161718
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G47230.11e-32ethylene responsive element binding factor 5