PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LOC_Os04g46240.1
Common NameLOC107277426, Os04g0547500, OSJNBa0065H10.2, OSJNBa0079A21.17, OSNPB_040547500
Organism
Oryza sativa subsp. japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family ERF
Protein Properties Length: 319aa    MW: 33819.7 Da    PI: 4.8782
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LOC_Os04g46240.1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2636.4e-20139190256
               AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 
                       +y+GVr+++ +g+++AeIrdp+ +g   r++lg+++t+ eAa+a+++a+ +++g+
  LOC_Os04g46240.1 139 KYRGVRQRP-WGKFAAEIRDPKRRG--SRVWLGTYDTPVEAARAYDRAAFRMRGA 190
                       8********.**********96554..**************************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.102.6E-32138198IPR001471AP2/ERF domain
CDDcd000187.70E-29139198No hitNo description
SuperFamilySSF541711.31E-22139198IPR016177DNA-binding domain
PfamPF008471.6E-14139189IPR001471AP2/ERF domain
PROSITE profilePS5103224.144139197IPR001471AP2/ERF domain
SMARTSM003805.5E-37139203IPR001471AP2/ERF domain
PRINTSPR003671.9E-13140151IPR001471AP2/ERF domain
PRINTSPR003671.9E-13179199IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009409Biological Processresponse to cold
GO:0010200Biological Processresponse to chitin
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 319 aa     Download sequence    Send to blast
MDFPGDAEDF ALEFIREHLL GGDAPVLPPA AVPAAAAYLP TSTMFLPQQQ RGYAGLTPQE  60
YVVDSAPAAD QAAFRDDQPD PAADVMIMFG GERFPAVKPS SSSSPSLTVT VPPSSFGSWA  120
PAAVPAVAAT AAAVEDFRKY RGVRQRPWGK FAAEIRDPKR RGSRVWLGTY DTPVEAARAY  180
DRAAFRMRGA KAILNFPNEV GTRGAELWAT PPPTNKRKRQ PEDDTAAADD VEVIGVANKA  240
VKTEAPTSAY SSSSLSSMSR DTTATTSSAG TSTGSSEPTS FPVVTPSSWS WDQYWDGLPP  300
LSPLSPHPAL GFPQLTVS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A2e-26138202468ATERF1
3gcc_A2e-26138202468ATERF1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Os.823521e-113leaf| root
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO329943501e-113
GEO334400251e-113
Expression AtlasQ7XSD2-
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00549DAPTransfer from AT5G47230Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapLOC_Os04g46240.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Phenotype -- Mutation ? help Back to Top
Source ID
RiceGEOs04g46240
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAL6070060.0AL607006.4 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0079A21, complete sequence.
GenBankAL7316130.0AL731613.5 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0065H10, complete sequence.
GenBankAP0149600.0AP014960.1 Oryza sativa Japonica Group DNA, chromosome 4, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015635244.10.0ethylene-responsive transcription factor ERF105
TrEMBLQ7XSD20.0Q7XSD2_ORYSJ; OSJNBa0065H10.2 protein
STRINGORUFI04G22240.10.0(Oryza rufipogon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP10337465
Representative plantOGRP6161718
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G47230.11e-32ethylene responsive element binding factor 5