PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LOC_Os04g46220.1
Common NameDRE, LOC4336571, Os04g0546800, OSJNBa0079A21.16, OSNPB_040546800
Organism
Oryza sativa subsp. japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family ERF
Protein Properties Length: 319aa    MW: 33140.8 Da    PI: 4.7654
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LOC_Os04g46220.1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP263.83.6e-20152202255
               AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                       +y+GVr+++ +g+++AeIrdp +ng  +r++lg+f+tae+Aa a+++a+ +++g
  LOC_Os04g46220.1 152 HYRGVRQRP-WGKFAAEIRDPAKNG--ARVWLGTFDTAEDAALAYDRAAYRMRG 202
                       8********.***********9987..*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000181.96E-30151210No hitNo description
Gene3DG3DSA:3.30.730.102.4E-32151210IPR001471AP2/ERF domain
PfamPF008473.9E-14152202IPR001471AP2/ERF domain
SMARTSM003805.9E-39152216IPR001471AP2/ERF domain
SuperFamilySSF541711.83E-23152212IPR016177DNA-binding domain
PROSITE profilePS5103224.276152210IPR001471AP2/ERF domain
PRINTSPR003675.2E-11153164IPR001471AP2/ERF domain
PRINTSPR003675.2E-11176192IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0020039anatomyleaf lamina
Sequence ? help Back to Top
Protein Sequence    Length: 319 aa     Download sequence    Send to blast
MTARSMLRNH PEASVLDTIR QHLLEEPRGG GGGEAAEASF GSLVADMWSD SLPFRDDDAD  60
DMVVFGAMRD AFSCGWLPDG VFAEVKPEPL LSPDSSSYDG SSCCFGFADV SEPVTPSDAA  120
SGAAEAAAAA AAATAEHGKE EEAAAAVARG KHYRGVRQRP WGKFAAEIRD PAKNGARVWL  180
GTFDTAEDAA LAYDRAAYRM RGSRALLNFP LRIGSEIAAA AAAAAAAAAG DKRPSPEPAT  240
SESSFSSSSS CTTTTTSSST SSSGSPKRRK RGEAAAASMS MPLVPPPSQL NWPVQAWYPA  300
AAPVEQVAIT PRVEQLVI*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A6e-40148215168ATERF1
3gcc_A6e-40148215168ATERF1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Os.110940.0callus| flower| leaf| panicle| root| seed| stem
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO2976031270.0
Expression AtlasQ0JB99-
Function -- GeneRIF ? help Back to Top
  1. OsERF1 has a role in the ethylene response.
    [PMID: 18313797]
Cis-element ? help Back to Top
SourceLink
PlantRegMapLOC_Os04g46220.1
Phenotype -- Mutation ? help Back to Top
Source ID
RiceGEOs04g46220
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK2431880.0AK243188.1 Oryza sativa Japonica Group cDNA, clone: J100039E18, full insert sequence.
GenBankAL6070060.0AL607006.4 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0079A21, complete sequence.
GenBankAP0149600.0AP014960.1 Oryza sativa Japonica Group DNA, chromosome 4, cultivar: Nipponbare, complete sequence.
GenBankEF0618880.0EF061888.1 Oryza sativa (japonica cultivar-group) development related ERF protein (DRE) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015636763.10.0ethylene-responsive transcription factor 2
TrEMBLQ0JB990.0Q0JB99_ORYSJ; Development related ERF protein
STRINGOS04T0546800-010.0(Oryza sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP38002972
Representative plantOGRP6161718
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G17500.15e-28ethylene responsive element binding factor 1
Publications ? help Back to Top
  1. Hu Y,Zhao L,Chong K,Wang T
    Overexpression of OsERF1, a novel rice ERF gene, up-regulates ethylene-responsive genes expression besides affects growth and development in Arabidopsis.
    J. Plant Physiol., 2008. 165(16): p. 1717-25
    [PMID:18313797]