PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LOC_Os04g46020.2
Organism
Oryza sativa subsp. japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family GATA
Protein Properties Length: 363aa    MW: 40428.3 Da    PI: 8.0154
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LOC_Os04g46020.2genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA51.61.3e-16741135
              GATA  1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35
                      C++Cg+t+TplWR+gp  ++ LCnaCG ++r kg+
  LOC_Os04g46020.2  7 CRHCGVTSTPLWRNGPPDKPVLCNACGSRWRTKGS 41
                      ****************55555***********997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004011.2E-9153IPR000679Zinc finger, GATA-type
SuperFamilySSF577162.33E-11545No hitNo description
CDDcd002025.36E-15640No hitNo description
PROSITE profilePS5011411.345740IPR000679Zinc finger, GATA-type
PfamPF003202.0E-14741IPR000679Zinc finger, GATA-type
Gene3DG3DSA:3.30.50.102.1E-12741IPR013088Zinc finger, NHR/GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0030154Biological Processcell differentiation
GO:0045944Biological Processpositive regulation of transcription from RNA polymerase II promoter
GO:0005634Cellular Componentnucleus
GO:0005667Cellular Componenttranscription factor complex
GO:0000977Molecular FunctionRNA polymerase II regulatory region sequence-specific DNA binding
GO:0001085Molecular FunctionRNA polymerase II transcription factor binding
GO:0001228Molecular Functiontranscriptional activator activity, RNA polymerase II transcription regulatory region sequence-specific binding
GO:0003682Molecular Functionchromatin binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 363 aa     Download sequence    Send to blast
MGKQGPCRHC GVTSTPLWRN GPPDKPVLCN ACGSRWRTKG SLTNYTPMHA RDDIDAEEPR  60
ASKLKPPTLK LKEQKQLKKN PSHITMENGP FSDQNFRKMG DPDLSNRSGS GSALSYSESC  120
APYGTADASE MTASAQSHAW ESLVPSKRRS CVTRPKPSQM EKLAKDLNSI MHEEQLLYLS  180
GSSEEDLIYH SATPVDSFEM GYGSMLLRPN SKSLEEESEA SSIPADNKSY ITSESYSGSV  240
SFVYSESKAT SNQNVITEQP KKFLVQTSDN ARRANLHTEN QDTLENANSP LVSLHMEGKD  300
SEETRVKTSA SNRLTKSTMN PLKRPHDTHF QSSVGQQLLT CIYCYLYLEK KQILYIHFLF  360
RP*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Os.145730.0callus| flower| leaf| panicle| stem
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO329807520.0
Cis-element ? help Back to Top
SourceLink
PlantRegMapLOC_Os04g46020.2
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Phenotype -- Mutation ? help Back to Top
Source ID
RiceGEOs04g46020
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0707290.0AK070729.1 Oryza sativa Japonica Group cDNA clone:J023063M07, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025880746.10.0uncharacterized protein LOC4336558
TrEMBLA0A0E0PC880.0A0A0E0PC88_ORYRU; Uncharacterized protein
TrEMBLQ7XN010.0Q7XN01_ORYSJ; OSJNBb0038F03.10 protein
STRINGORUFI04G22090.10.0(Oryza rufipogon)
STRINGOS04T0544500-010.0(Oryza sativa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G17570.35e-57GATA transcription factor 26