PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | LOC_Os04g45940.1 | ||||||||
Common Name | LOC4336551, Os04g0543500, OSJNBb0038F03.2, OSJNBb0103I08.19 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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Family | Trihelix | ||||||||
Protein Properties | Length: 206aa MW: 22366.5 Da PI: 10.7441 | ||||||||
Description | Trihelix family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | trihelix | 29.5 | 1.9e-09 | 20 | 81 | 1 | 65 |
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkik 65 +Wt +e+laL +a++ + +++r+ l ++W++v+++ ++++ qC++k e+l++r + + LOC_Os04g45940.1 20 CWTPDETLALARAYTARRLAVGRAHLTSADWAAVADAATP---TKTARQCRHKVEKLRRRLRSKR 81 8**********************************98766...57889***********998766 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF13837 | 9.7E-8 | 19 | 82 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 6.9E-4 | 21 | 77 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50090 | 6.249 | 21 | 74 | IPR017877 | Myb-like domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Plant Ontology ? help Back to Top | ||||||
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PO Term | PO Category | PO Description | ||||
PO:0009089 | anatomy | endosperm | ||||
PO:0007042 | developmental stage | whole plant fruit formation stage | ||||
PO:0007633 | developmental stage | endosperm development stage |
Sequence ? help Back to Top |
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Protein Sequence Length: 206 aa Download sequence Send to blast |
MASSSPTNAA AAARRVPPPC WTPDETLALA RAYTARRLAV GRAHLTSADW AAVADAATPT 60 KTARQCRHKV EKLRRRLRSK RRRPCPLLDA IDLLDGPSPS ASPSQSPSPP PPASPPPLPP 120 APSSPPPKKR RLPDGDADAD AEDDGESDVV KALRAIGEGF LRAEQRRMEA ARKTQQMRME 180 MALRHLDSQR RLMEALVDRI IDSLE* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 71 | 77 | KLRRRLR |
2 | 72 | 78 | LRRRLRS |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Os.4865 | 0.0 | callus| flower| leaf| panicle| root| stem |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | E-value | ||||
GEO | 297603110 | 0.0 | ||||
Expression Atlas | Q7X731 | - |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | LOC_Os04g45940.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Phenotype -- Mutation ? help Back to Top | ||||||
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Source | ID | |||||
RiceGE | Os04g45940 |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AL606695 | 0.0 | AL606695.3 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBb0103I08, complete sequence. | |||
GenBank | AL606728 | 0.0 | AL606728.3 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBb0038F03, complete sequence. | |||
GenBank | AP014960 | 0.0 | AP014960.1 Oryza sativa Japonica Group DNA, chromosome 4, cultivar: Nipponbare, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015637007.1 | 1e-140 | leiomodin-2 | ||||
TrEMBL | Q7X731 | 1e-139 | Q7X731_ORYSJ; OSJNBb0038F03.2 protein | ||||
STRING | ORUFI04G22010.1 | 1e-139 | (Oryza rufipogon) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP13911 | 20 | 24 | Representative plant | OGRP13172 | 4 | 5 |
Link Out ? help Back to Top | |
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Phytozome | LOC_Os04g45940.1 |
Entrez Gene | 4336551 |