PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LOC_Os04g45810.1
Common NameHOX22, LOC4336542, Os04g0541700, OsJ_014981, OSJNBb0103I08.6
Organism
Oryza sativa subsp. japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family HD-ZIP
Protein Properties Length: 277aa    MW: 30653.1 Da    PI: 5.0075
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LOC_Os04g45810.1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox61.71.1e-1974127456
                       -SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
          Homeobox   4 RttftkeqleeLeelFek.nrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                       +++ft+eq++ Le++F+  + ++  +e++eLA++lgL+ rqV +WFqN+Ra+++
  LOC_Os04g45810.1  74 KRRFTEEQIRSLESMFHAhHAKLEPREKAELARELGLQPRQVAIWFQNKRARWR 127
                       458**************9899********************************9 PP
2HD-ZIP_I/II125.13.2e-4072165193
       HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeee.kLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelk 92 
                       e+krr+++eq+++LE++F++++ kLep++K+elareLglqprqva+WFqn+RAR+++kqlE+dy+aL+++ydal+++ e+L++e+ +L+ +l+
  LOC_Os04g45810.1  72 ERKRRFTEEQIRSLESMFHAHHaKLEPREKAELARELGLQPRQVAIWFQNKRARWRSKQLEHDYAALRSKYDALHSRVESLKQEKLALTVQLH 164
                       69******************999******************************************************************9998 PP

       HD-ZIP_I/II  93 e 93 
                       e
  LOC_Os04g45810.1 165 E 165
                       6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466892.51E-1863131IPR009057Homeodomain-like
PROSITE profilePS5007117.4168129IPR001356Homeobox domain
SMARTSM003898.6E-2071133IPR001356Homeobox domain
CDDcd000861.19E-1773130No hitNo description
PfamPF000464.3E-1774127IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.609.2E-2074136IPR009057Homeodomain-like
PRINTSPR000317.1E-7100109IPR000047Helix-turn-helix motif
PROSITE patternPS000270104127IPR017970Homeobox, conserved site
PRINTSPR000317.1E-7109125IPR000047Helix-turn-helix motif
PfamPF021838.6E-14129170IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0020039anatomyleaf lamina
Sequence ? help Back to Top
Protein Sequence    Length: 277 aa     Download sequence    Send to blast
MNGRTQLASW ARIAMDRGDH HHLQQQHQFL MPPPAPVVPP QLCMPAMMAD EQYMDLGGGG  60
AAAAPGRGGA GERKRRFTEE QIRSLESMFH AHHAKLEPRE KAELARELGL QPRQVAIWFQ  120
NKRARWRSKQ LEHDYAALRS KYDALHSRVE SLKQEKLALT VQLHELRERL REREERSGNG  180
GAATTAASSS SCNGSGSEEV DDDDDKRNAA AGCLDLEPPE SCVLGGATCA TPADVSVESD  240
QCDDQLDYDE GLFPESFCAT PELWEPWPLV EWNAVA*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Os.121340.0callus| leaf
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO329943860.0
Expression AtlasQ7XUJ5-
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in seedlings, roots, stems, leaf sheaths and blades and panicles. {ECO:0000269|PubMed:17999151}.
UniprotTISSUE SPECIFICITY: Expressed in seedlings, roots, stems, leaf sheaths and blades and panicles. {ECO:0000269|PubMed:17999151}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
UniProtProbable transcription factor. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapLOC_Os04g45810.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: In leaves by drought stress. {ECO:0000269|PubMed:17999151}.
UniProtINDUCTION: In leaves by drought stress. {ECO:0000269|PubMed:17999151}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Interaction ? help Back to Top
Source Intact With
IntActSearch Q7XUJ5
Phenotype -- Mutation ? help Back to Top
Source ID
RiceGEOs04g45810
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY2244400.0AY224440.1 Oryza sativa (japonica cultivar-group) isolate 22834 homeodomain leucine zipper protein-like protein mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015634133.10.0homeobox-leucine zipper protein HOX22
SwissprotQ01IK00.0HOX22_ORYSI; Homeobox-leucine zipper protein HOX22
SwissprotQ7XUJ50.0HOX22_ORYSJ; Homeobox-leucine zipper protein HOX22
TrEMBLA0A0D3FYH60.0A0A0D3FYH6_9ORYZ; Uncharacterized protein
TrEMBLA0A0D9ZNQ20.0A0A0D9ZNQ2_9ORYZ; Uncharacterized protein
TrEMBLA0A0E0H3R10.0A0A0E0H3R1_ORYNI; Uncharacterized protein
TrEMBLA0A0E0PC660.0A0A0E0PC66_ORYRU; Uncharacterized protein
TrEMBLI1PNG80.0I1PNG8_ORYGL; Uncharacterized protein
STRINGOGLUM04G20240.10.0(Oryza glumipatula)
STRINGORUFI04G21910.10.0(Oryza rufipogon)
STRINGONIVA04G18550.10.0(Oryza nivara)
STRINGORGLA04G0173700.10.0(Oryza glaberrima)
STRINGOBART04G20320.10.0(Oryza barthii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP40273175
Representative plantOGRP1482144
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G46680.18e-35homeobox 7
Publications ? help Back to Top
  1. Cooper B, et al.
    A network of rice genes associated with stress response and seed development.
    Proc. Natl. Acad. Sci. U.S.A., 2003. 100(8): p. 4945-50
    [PMID:12684538]
  2. Agalou A, et al.
    A genome-wide survey of HD-Zip genes in rice and analysis of drought-responsive family members.
    Plant Mol. Biol., 2008. 66(1-2): p. 87-103
    [PMID:17999151]