PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LOC_Os04g45330.1
Common NameLOC4336518, Os04g0536300, OsJ_014945, OSJNBb0020O11.2, YAB5
Organism
Oryza sativa subsp. japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family YABBY
Protein Properties Length: 267aa    MW: 28216.8 Da    PI: 7.7843
Description YABBY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LOC_Os04g45330.1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1YABBY208.72.1e-64272186170
             YABBY   6 sseqvCyvqCnfCntilavsvPstslfkvvtvrCGhCtsllsvnlakasqllaaeshldeslkee.......................lleel 75 
                         eq+Cyv+CnfC+tilav vP +slfk+vtvrCGhC++llsvnl+      aa+   +  + +                        ++e+ 
  LOC_Os04g45330.1  27 EQEQLCYVHCNFCDTILAVGVPCSSLFKTVTVRCGHCANLLSVNLRGLLLPAAASTANQLPFGQAllsptsphglldevpsfqapaslMTEQA 119
                       579*******************************************998665555554555555566668999*9999999998876544444 PP

             YABBY  76 kveeenlksnvekeesastsvssekl......senedeevpr.vppvirPPekrqrvPsaynrfikeeiqrikasnPdishreafsaaaknWa 161
                         + ++++s +++     ++ +++++       ++++ + p+ +p ++r  ekrqrvPsaynrfik+eiqrikasnPdi+hreafsaaaknWa
  LOC_Os04g45330.1 120 SPNVSSITSSNSSCA---NNAPATSMasaankATQREPQQPKnAPSANRTSEKRQRVPSAYNRFIKDEIQRIKASNPDITHREAFSAAAKNWA 209
                       444444433332222...22222222233323333333444415569********************************************** PP

             YABBY 162 hfPkihfgl 170
                       hfP+ihfgl
  LOC_Os04g45330.1 210 HFPHIHFGL 218
                       *******97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF046907.4E-7127218IPR006780YABBY protein
SuperFamilySSF470952.75E-7160211IPR009071High mobility group box domain
Gene3DG3DSA:1.10.30.102.8E-4170210IPR009071High mobility group box domain
CDDcd000848.20E-5172208No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0007275Biological Processmulticellular organism development
GO:0030154Biological Processcell differentiation
GO:0005634Cellular Componentnucleus
GO:0046872Molecular Functionmetal ion binding
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0009049anatomyinflorescence
PO:0001083developmental stageinflorescence development stage
PO:0007006developmental stageIL.00 inflorescence just visible stage
Sequence ? help Back to Top
Protein Sequence    Length: 267 aa     Download sequence    Send to blast
MMSSAPETFS LDHLSQHQQQ QPPPLAEQEQ LCYVHCNFCD TILAVGVPCS SLFKTVTVRC  60
GHCANLLSVN LRGLLLPAAA STANQLPFGQ ALLSPTSPHG LLDEVPSFQA PASLMTEQAS  120
PNVSSITSSN SSCANNAPAT SMASAANKAT QREPQQPKNA PSANRTSEKR QRVPSAYNRF  180
IKDEIQRIKA SNPDITHREA FSAAAKNWAH FPHIHFGLMP DQGLKKTGIQ SQDGAGECML  240
FKDGLYAAAA AAAAATAASS MGVTPF*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Os.62190.0callus| flower| panicle
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO1242710350.0
Expression AtlasQ0JBF0-
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in leaf primordia, young leaves, floret meristems, floral organ primordia, stamens and carpels. Does not show polar expression pattern. {ECO:0000269|PubMed:17216490, ECO:0000269|PubMed:17351053}.
Functional Description ? help Back to Top
Source Description
UniProtMay be involved in leaf cell growth and differentiation, rather than abaxial cell fate determination. {ECO:0000250}.
UniProtMay be involved in leaf cell growth and differentiation, rather than abaxial cell fate determination. {ECO:0000269|PubMed:17351053}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapLOC_Os04g45330.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Repressed by WOX3. {ECO:0000269|PubMed:17351053}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Phenotype -- Mutation ? help Back to Top
Source ID
RiceGEOs04g45330
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB2740170.0AB274017.1 Oryza sativa Japonica Group OsYABBY5 mRNA for OsYABBY5 protein, complete cds.
GenBankAK0702050.0AK070205.1 Oryza sativa Japonica Group cDNA clone:J023042I23, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015634596.10.0protein YABBY 5
SwissprotQ01JG20.0YAB5_ORYSI; Protein YABBY 5
SwissprotQ0JBF00.0YAB5_ORYSJ; Protein YABBY 5
TrEMBLA0A0D9ZNK40.0A0A0D9ZNK4_9ORYZ; Uncharacterized protein
STRINGOS04T0536300-010.0(Oryza sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP144538121
Representative plantOGRP46851123
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G45190.18e-57YABBY family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Toriba T, et al.
    Molecular characterization the YABBY gene family in Oryza sativa and expression analysis of OsYABBY1.
    Mol. Genet. Genomics, 2007. 277(5): p. 457-68
    [PMID:17216490]
  3. Dai M,Hu Y,Zhao Y,Liu H,Zhou DX
    A WUSCHEL-LIKE HOMEOBOX gene represses a YABBY gene expression required for rice leaf development.
    Plant Physiol., 2007. 144(1): p. 380-90
    [PMID:17351053]
  4. Khanday I, et al.
    Genome-Wide Targets Regulated by the OsMADS1 Transcription Factor Reveals Its DNA Recognition Properties.
    Plant Physiol., 2016. 172(1): p. 372-88
    [PMID:27457124]