PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LOC_Os04g45020.1
Common NameLOC4336500, Os04g0532800, OSJNBb0039L24.8, OSNPB_040532800
Organism
Oryza sativa subsp. japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family MYB
Protein Properties Length: 274aa    MW: 29536 Da    PI: 6.5059
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LOC_Os04g45020.1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding47.25.1e-151562148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
   Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                      +g W++eEd++l d + ++G g+W++++ + g+ R +k+c++rw +yl
  LOC_Os04g45020.1 15 KGLWSPEEDQKLRDFILRYGHGCWSAVPVKAGLQRNGKSCRLRWINYL 62
                      678*******************************************97 PP
2Myb_DNA-binding50.64.5e-1669113248
                       SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
   Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                       g ++ eE+e   ++++ +G++ W+ Iar+++ gRt++++k++w++yl
  LOC_Os04g45020.1  69 GMFSREEEETVMNLHATMGNK-WSQIARHLP-GRTDNEVKNYWNSYL 113
                       56999****************.*********.*************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129413.91062IPR017930Myb domain
Gene3DG3DSA:1.10.10.609.0E-211065IPR009057Homeodomain-like
SuperFamilySSF466892.31E-2813109IPR009057Homeodomain-like
SMARTSM007175.9E-111464IPR001005SANT/Myb domain
PfamPF002493.5E-131562IPR001005SANT/Myb domain
CDDcd001672.04E-101862No hitNo description
PROSITE profilePS5129424.27363117IPR017930Myb domain
Gene3DG3DSA:1.10.10.601.6E-2566116IPR009057Homeodomain-like
SMARTSM007176.1E-1467115IPR001005SANT/Myb domain
PfamPF002491.9E-1469113IPR001005SANT/Myb domain
CDDcd001674.46E-1271113No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009751Biological Processresponse to salicylic acid
GO:0010018Biological Processfar-red light signaling pathway
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0009089anatomyendosperm
PO:0007042developmental stagewhole plant fruit formation stage
PO:0007633developmental stageendosperm development stage
Sequence ? help Back to Top
Protein Sequence    Length: 274 aa     Download sequence    Send to blast
MGCKACQKPK VHYRKGLWSP EEDQKLRDFI LRYGHGCWSA VPVKAGLQRN GKSCRLRWIN  60
YLRPGLKHGM FSREEEETVM NLHATMGNKW SQIARHLPGR TDNEVKNYWN SYLKKRVEGA  120
EAAARKSAEP ADVVTGSPNR SETGQERVAA DRPASSESSG PVESSSADDS SSLTEPAAGL  180
AAVRPHAPVI PKVMFADWFD MDYGTSLAGT APGLSYQGSS SVQVDVPCGG AVDSLHGLGD  240
GGFCWDFDDA ADHMQGGGGL CDLLSMSEFL GIN*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A9e-26151187109B-MYB
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Os.549350.0flower| panicle| seed
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO329923440.0
Expression AtlasQ7XML0-
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed at very low level. Expressed in cauline leaves. {ECO:0000269|PubMed:11581165}.
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that promotes photomorphogenesis in the light by participating in the transmission of phytochrome A (phyA) signals to downstream responses (PubMed:11581165, PubMed:19482971). Probably acts by activating expression of light-induced genes. In darkness, its degradation prevents the activation of light-induced genes (PubMed:11581165). {ECO:0000269|PubMed:11581165, ECO:0000269|PubMed:19482971}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapLOC_Os04g45020.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By hormones or elicitors treatment. By exposure to abiotic stress. {ECO:0000269|PubMed:9839469}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Phenotype -- Mutation ? help Back to Top
Source ID
RiceGEOs04g45020
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1071350.0AK107135.1 Oryza sativa Japonica Group cDNA clone:002-124-C09, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015636234.10.0transcription factor LAF1
SwissprotQ9M0K42e-61LAF1_ARATH; Transcription factor LAF1
TrEMBLA2XVU60.0A2XVU6_ORYSI; Uncharacterized protein
TrEMBLQ7XML00.0Q7XML0_ORYSJ; OSJNBb0039L24.8 protein
STRINGOS04T0532800-010.0(Oryza sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP170737109
Representative plantOGRP5171784
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G25560.17e-59myb domain protein 18
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]