PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LOC_Os04g44630.1
Common NameOSJNBa0074L08.5
Organism
Oryza sativa subsp. japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family FAR1
Protein Properties Length: 1033aa    MW: 119091 Da    PI: 7.8714
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LOC_Os04g44630.1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR188.31.1e-27314410191
              FAR1   1 kfYneYAkevGFsvrkskskks...krngeitkrtfvCskegkreeekkk....tekerrtraetrtgCkaklkvkkekdgkwevtkleleHn 86 
                       +f+n+YA++vGFsv++++++ks   kr g+itk+t++C+++gk+++ +kk    t+++r+t++ +rt+Ck++l+v+++  ++w++ +++l+Hn
  LOC_Os04g44630.1 314 SFFNFYAYQVGFSVVITHHYKStskKRFGQITKYTYQCYRYGKNDDGQKKkkkkTQQQRNTQVIDRTDCKCMLTVRLD-GDVWRILSMNLNHN 405
                       59*******************99989999**************99877777777899999******************.9************* PP

              FAR1  87 Helap 91 
                       H+l+p
  LOC_Os04g44630.1 406 HTLTP 410
                       **975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031015.3E-27314410IPR004330FAR1 DNA binding domain
PfamPF105513.8E-37531623IPR018289MULE transposase domain
PROSITE profilePS509669.742817853IPR007527Zinc finger, SWIM-type
SMARTSM005751.9E-4828855IPR006564Zinc finger, PMZ-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 1033 aa     Download sequence    Send to blast
MTSREAIQEG ETIRQQSEES KNDAMQIEGS KRNINMAPGR LAYARSPNIY NLQEGEGSSS  60
KMPHLGCRKI QHVGKNFNSP ELSNTIGTIA SEVVNYGGQM LYDQFTLLNL DPRQEGQLSY  120
TNLIHQIIHS PTVTIQQQTG GQESFTSLLR TPAFDNSMIL TTSRFSPELE EQQDMTYEQH  180
ISTTHWSYEE FDQIYNNKYI TPFAENTTAR IEELYQSKNS HFTTKEGTSN MLQQDSQINT  240
ITAIEQVEQH VGQAETTSET KATSAEDNDT INEEDINNYL ANEEDSQDNT PVVIDKKHIP  300
CIGKKFRTHE EARSFFNFYA YQVGFSVVIT HHYKSTSKKR FGQITKYTYQ CYRYGKNDDG  360
QKKKKKKTQQ QRNTQVIDRT DCKCMLTVRL DGDVWRILSM NLNHNHTLTP NREAKFLRSH  420
KHMTDEEKKL IRTLKQCNIP TRNMISILSF LRGGIAALPY TGKDVSNVGT AINSETRNTD  480
MNQVMEYLRQ KEAKDPGYYY KLTLDENNKV KSMFWTDGRS TQLYEQYGEF VSFDTTYKTN  540
RYNMPFAPIV GVTGHGNICI FACAFLGDET TETFKWVFET FLTAMGGKHP ETIITDQDLA  600
MRAAIRQVFP NSKHRNCLFH ILKKCRERSG NTFSDKRRKD LYAEFNDIVH NSLTRAEFES  660
LWLQMIAQYN LKNIKYLEIM WRTRKNFIPV YSKTDFCPFI HSTALSEGTN ARFKRGVGPT  720
HSVMTFLLEY ETINDIIFDT EYGKDYESRN KKPKSFWSNY MIEEQAADLY NHGIFDKFQD  780
ELKGTLNLEV AAIQQGKAYE VYAAPNLKQQ EFRPRRYVVM TDLPQENFVC ICAKFSKDGI  840
LCSHVLKVML YLKMSKIPDK YIIERWRKKE RKLTVSMQLA TNDENSSVLR FNVLSRRICN  900
MASKASKSKE TCEYLLGEID NLDSNLDLII EDAAQNQASI DESNTVENTS EDQAEKETTN  960
EQEDIQDPDI ANTKGKKSAR TKGMVEKIKE QPKKHCTRCG RTSHTIENCP LMQIARSTKK  1020
IQKSTTTSKR NE*
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasQ7XS43
Cis-element ? help Back to Top
SourceLink
PlantRegMapLOC_Os04g44630.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Phenotype -- Mutation ? help Back to Top
Source ID
RiceGEOs04g44630
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAL6629760.0AL662976.3 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0074L08, complete sequence.
GenBankAP0149600.0AP014960.1 Oryza sativa Japonica Group DNA, chromosome 4, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025881725.10.0protein FAR1-RELATED SEQUENCE 5-like
TrEMBLQ7XS430.0Q7XS43_ORYSJ; OSJNBa0074L08.5 protein
STRINGOB09G10870.10.0(Oryza brachyantha)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP1832967
Representative plantOGRP3012351
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38180.17e-93FAR1-related sequence 5