PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | LOC_Os04g44440.1 | ||||||||
Common Name | LOC4336452, Os04g0526000, OSJNBa0038O10.11, OSNPB_040526000 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
|
||||||||
Family | TCP | ||||||||
Protein Properties | Length: 207aa MW: 21985 Da PI: 10.9191 | ||||||||
Description | TCP family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | TCP | 110.9 | 1.8e-34 | 51 | 168 | 4 | 89 |
TCP 4 kkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssa.sec....eaesssssas.....nss 86 +++ +++h+kv+gR+RRvR+++ caar+F+L++eLG+++d++tieWLl+qa+p+i ++tg+++++a +c + s+s LOC_Os04g44440.1 51 ATQGGKDRHSKVNGRGRRVRMPIVCAARVFQLTRELGLKSDGQTIEWLLRQAEPSILAATGSGTTPAvFSCssapS----TASSSfllgkR-- 137 556679********************************************************88888544432221....22222222221.. PP TCP 87 sg.............................k 89 + + LOC_Os04g44440.1 138 -PrqedheaptfwealqqqprpavsswgalvS 168 .0333443344444444444443333333331 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03634 | 1.0E-30 | 54 | 151 | IPR005333 | Transcription factor, TCP |
PROSITE profile | PS51369 | 27.009 | 55 | 109 | IPR017887 | Transcription factor TCP subgroup |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0042752 | Biological Process | regulation of circadian rhythm | ||||
GO:0043433 | Biological Process | negative regulation of sequence-specific DNA binding transcription factor activity | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Plant Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PO Term | PO Category | PO Description | ||||
PO:0009038 | anatomy | palea | ||||
PO:0001048 | developmental stage | palea development stage | ||||
PO:0007130 | developmental stage | sporophyte reproductive stage |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 207 aa Download sequence Send to blast |
MASRDAATFQ VYRPMAMPTP AALPPSSQQI TMPFTAALVD AVLPAPRKAA ATQGGKDRHS 60 KVNGRGRRVR MPIVCAARVF QLTRELGLKS DGQTIEWLLR QAEPSILAAT GSGTTPAVFS 120 CSSAPSTASS SFLLGKRPRQ EDHEAPTFWE ALQQQPRPAV SSWGALVSPS QEAQAYASSV 180 AQVHHLNLLS ALSGAATRRP AQEESR* |
Expression -- UniGene ? help Back to Top | ||||||
---|---|---|---|---|---|---|
UniGene ID | E-value | Expressed in | ||||
Os.52097 | 0.0 | panicle |
Expression -- Microarray ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | ID | E-value | ||||
GEO | 116631915 | 0.0 | ||||
Expression Atlas | Q7XKJ6 | - |
Binding Motif ? help Back to Top | |||
---|---|---|---|
Motif ID | Method | Source | Motif file |
MP00499 | DAP | Transfer from AT5G08330 | Download |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | LOC_Os04g44440.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Phenotype -- Mutation ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | ID | |||||
RiceGE | Os04g44440 |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | AL663019 | 0.0 | AL663019.2 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0038O10, complete sequence. | |||
GenBank | AP014960 | 0.0 | AP014960.1 Oryza sativa Japonica Group DNA, chromosome 4, cultivar: Nipponbare, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_015635777.1 | 1e-147 | transcription factor TCP21 | ||||
TrEMBL | Q7XKJ6 | 1e-146 | Q7XKJ6_ORYSJ; OSJNBa0038O10.11 protein | ||||
STRING | OS04T0526000-01 | 1e-147 | (Oryza sativa) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1941 | 33 | 100 | Representative plant | OGRP922 | 14 | 59 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT5G08330.1 | 8e-38 | TCP family protein |
Link Out ? help Back to Top | |
---|---|
Phytozome | LOC_Os04g44440.1 |
Entrez Gene | 4336452 |