PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LOC_Os04g42570.1
Common NameLOC9266143, Os04g0504500, OSNPB_040504500
Organism
Oryza sativa subsp. japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family AP2
Protein Properties Length: 659aa    MW: 67592.8 Da    PI: 6.5068
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LOC_Os04g42570.1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP239.71.2e-12278337155
               AP2   1 sgykGVrwdkkrgrWvAeIrd.pse.ng..kr.krfslgkfgtaeeAakaaiaarkkleg 55 
                       s y+GV++++++gr++A+++d  +   g  ++ +++ +g ++ +++Aa+a++ a++k++g
  LOC_Os04g42570.1 278 SIYRGVTRHRWTGRYEAHLWDnSCRrEGqsRKgRQVCVGGYDKEDKAARAYDLAALKYWG 337
                       57*******************666664477446**********99*************98 PP
2AP251.23e-16380431155
               AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                       s+y+GV+++++ grW A+I  +     +k ++lg+f t+eeAa+a++ a+ k++g
  LOC_Os04g42570.1 380 SKYRGVTRHHQHGRWQARIGRVAG---NKDIYLGTFSTEEEAAEAYDIAAIKFRG 431
                       89****************988532...5************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541719.81E-16278347IPR016177DNA-binding domain
CDDcd000184.48E-17278347No hitNo description
PfamPF008473.1E-10278337IPR001471AP2/ERF domain
SMARTSM003801.1E-24279351IPR001471AP2/ERF domain
PROSITE profilePS5103217.504279345IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.7E-13279347IPR001471AP2/ERF domain
PRINTSPR003673.3E-6280291IPR001471AP2/ERF domain
SuperFamilySSF541712.42E-18380441IPR016177DNA-binding domain
CDDcd000183.84E-23380441No hitNo description
PfamPF008471.7E-10380431IPR001471AP2/ERF domain
PROSITE profilePS5103219.401381439IPR001471AP2/ERF domain
SMARTSM003804.3E-34381445IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.0E-18381440IPR001471AP2/ERF domain
PRINTSPR003673.3E-6421441IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000723Biological Processtelomere maintenance
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0007389Biological Processpattern specification process
GO:0010449Biological Processroot meristem growth
GO:0019827Biological Processstem cell population maintenance
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0009005anatomyroot
Sequence ? help Back to Top
Protein Sequence    Length: 659 aa     Download sequence    Send to blast
MASADNWLGF SLSGQGNPQH HQNGSPSAAG DAAIDISGSG DFYGLPTPDA HHIGMAGEDA  60
PYGVMDAFNR GTHETQDWAM RGLDYGGGSS DLSMLVGSSG GGRRTVAGDG VGEAPKLENF  120
LDGNSFSDVH GQAAGGYLYS GSAVGGAGGY SNGGCGGGTI ELSMIKTWLR SNQSQQQPSP  180
PQHADQGMST DASASSYACS DVLVGSCGGG GAGGTASSHG QGLALSMSTG SVAAAGGGGA  240
VVAAESSSSE NKRVDSPGGA VDGAVPRKSI DTFGQRTSIY RGVTRHRWTG RYEAHLWDNS  300
CRREGQSRKG RQVCVGGYDK EDKAARAYDL AALKYWGTTT TTNFPMSNYE KELEEMKHMT  360
RQEYIAHLRR NSSGFSRGAS KYRGVTRHHQ HGRWQARIGR VAGNKDIYLG TFSTEEEAAE  420
AYDIAAIKFR GLNAVTNFDM SRYDVKSILD SSTLPVGGAA RRLKEAEVAA AAAGGGVIVS  480
HLADGGVGGY YYGCGPTIAF GGGGQQPAPL AVHYPSYGQA SGWCKPEQDA VIAAGHCATD  540
LQHLHLGSGG AAATHNFFQQ PASSSAVYGN GGGGGGNAFM MPMGAVVAAA DHGGQSSAYG  600
GGDESGRLVV GYDGVVDPYA AMRSAYELSQ GSSSSSVSVA KAANGYPDNW SSPFNGMG*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Os.867350.0callus| leaf
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasA0A0P0WCI6
Expression -- Description ? help Back to Top
Source Description
UniprotDEVELOPMENTAL STAGE: Expressed in embryo throughout embryogenesis. Also present in free nuclear endosperm, but disappears once endosperm cellularization begins. {ECO:0000269|PubMed:12172019}.
UniprotTISSUE SPECIFICITY: Mostly expressed in developing seeds. {ECO:0000269|PubMed:12172019}.
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that promotes cell proliferation, differentiation and morphogenesis, especially during embryogenesis. {ECO:0000269|PubMed:12172019}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00368DAPTransfer from AT3G20840Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapLOC_Os04g42570.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Phenotype -- Mutation ? help Back to Top
Source ID
RiceGEOs04g42570
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK2877260.0AK287726.1 Oryza sativa Japonica Group cDNA, clone: J065138E17, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015635553.10.0AP2-like ethylene-responsive transcription factor BBM1
SwissprotQ8LSN21e-134BBM2_BRANA; AP2-like ethylene-responsive transcription factor BBM2
TrEMBLA0A0P0WCI60.0A0A0P0WCI6_ORYSJ; Os04g0504500 protein
STRINGOS04T0504500-010.0(Oryza sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP156937110
Representative plantOGRP11217209
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G20840.11e-121AP2 family protein