PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LOC_Os04g41229.2
Common NameLOC4336235, Os04g0489600, OSNPB_040489600
Organism
Oryza sativa subsp. japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family bHLH
Protein Properties Length: 348aa    MW: 36699.3 Da    PI: 9.0455
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LOC_Os04g41229.2genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH36.39.7e-12297342655
                       HHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
               HLH   6 nerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                       +++Er RR ri +++ +L+ l+P+     +k  s +++L +Av++Ik Lq
  LOC_Os04g41229.2 297 SIAERERRTRISEKLRKLQALVPNM----DKQTSTSDMLDLAVDHIKGLQ 342
                       689*********************7....688*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088814.215291341IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474598.77E-14294346IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.00E-12295346No hitNo description
Gene3DG3DSA:4.10.280.102.0E-11296346IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000104.2E-9297342IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.5E-12297347IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045944Biological Processpositive regulation of transcription from RNA polymerase II promoter
GO:0005634Cellular Componentnucleus
GO:0001046Molecular Functioncore promoter sequence-specific DNA binding
GO:0001228Molecular Functiontranscriptional activator activity, RNA polymerase II transcription regulatory region sequence-specific binding
GO:0046983Molecular Functionprotein dimerization activity
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0000032anatomytetrad of microspores
PO:0001029developmental stageE tetrad stage
PO:0007130developmental stagesporophyte reproductive stage
Sequence ? help Back to Top
Protein Sequence    Length: 348 aa     Download sequence    Send to blast
MNPAPSRAPQ RQQRGGEMSA RYGGGLQFFA DAPPAGVEGG AATARTFFPV PGGGGEQQPP  60
ERAMRQQHYG GGGSGAAEIS LGHGHGHGGK HHFHQFGVEA KDGGGGGDQS GFLTRHNSSP  120
PGFFSSPVMD NGFSSSARPA GSSLGEVRHG AMSSSSNNNK KMKAPLSFAS SRQGSGGLSQ  180
ISEDGIPDLT DSIHGAAHHH GRSEENVSTH DHVVRSFSSG GFSIGSWEDS NSIVFSTSTG  240
KSGAHGNDDI IATLSNYESQ LVAPREMAGV EKYLQMQHDQ VPFRVRAKRG CATHPRSIAE  300
RERRTRISEK LRKLQALVPN MDKQTSTSDM LDLAVDHIKG LQSQLQV*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Os.575350.0leaf| root| stem
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO329723190.0
Expression AtlasQ0JC65-
Cis-element ? help Back to Top
SourceLink
PlantRegMapLOC_Os04g41229.2
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Phenotype -- Mutation ? help Back to Top
Source ID
RiceGEOs04g41229
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0680390.0AK068039.1 Oryza sativa Japonica Group cDNA clone:J013131B20, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015636683.10.0transcription factor bHLH129
TrEMBLB8AVU60.0B8AVU6_ORYSI; Uncharacterized protein
TrEMBLQ0JC650.0Q0JC65_ORYSJ; Os04g0489600 protein
STRINGOS04T0489600-020.0(Oryza sativa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G42280.19e-38bHLH family protein