PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | LOC_Os04g41060.1 | ||||||||
Common Name | Os04g0487550 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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Family | C3H | ||||||||
Protein Properties | Length: 147aa MW: 15845.9 Da PI: 9.605 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 22.9 | 1.5e-07 | 117 | 136 | 6 | 26 |
-SGGGGTS--TTTTT-SS-SS CS zf-CCCH 6 CrffartGtCkyGdrCkFaHg 26 C +f++ G C++Gd C FaHg LOC_Os04g41060.1 117 CLDFRK-GGCNHGDACEFAHG 136 999999.*************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00356 | 3.3E-4 | 112 | 137 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 10.962 | 116 | 138 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 1.3E-5 | 116 | 136 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 9.5E-6 | 117 | 137 | IPR000571 | Zinc finger, CCCH-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 147 aa Download sequence Send to blast |
MTESTKIKYC RADSGSGSKP LSAETKTRLM ADGKKIDEEK KDGTAVRRVL FWFAVLVIRF 60 ALLMAMHYYH DVTSSRCDGA RAGGARTGRS ALSRVRGRRR GGGTPDTRPY CDSGTACLDF 120 RKGGCNHGDA CEFAHGVFDN SSADLA* |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | |||||
Expression Atlas | Q7XSB2 |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | LOC_Os04g41060.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Phenotype -- Mutation ? help Back to Top | ||||||
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Source | ID | |||||
RiceGE | Os04g41060 |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AL662946 | 1e-126 | AL662946.2 Oryza sativa genomic DNA, chromosome 4, BAC clone: OJ991113_30, complete sequence. | |||
GenBank | AP014960 | 1e-126 | AP014960.1 Oryza sativa Japonica Group DNA, chromosome 4, cultivar: Nipponbare, complete sequence. | |||
GenBank | CP012612 | 1e-126 | CP012612.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 4 sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Swissprot | Q7XSB2 | 1e-104 | C3H29_ORYSJ; Putative zinc finger CCCH domain-containing protein 29 | ||||
TrEMBL | A0A0E0PAT5 | 1e-102 | A0A0E0PAT5_ORYRU; Uncharacterized protein | ||||
TrEMBL | I1PMG6 | 1e-102 | I1PMG6_ORYGL; Uncharacterized protein | ||||
STRING | ORUFI04G18220.1 | 1e-103 | (Oryza rufipogon) | ||||
STRING | OS04T0487550-00 | 1e-103 | (Oryza sativa) | ||||
STRING | ORGLA04G0138500.1 | 1e-103 | (Oryza glaberrima) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP23462 | 5 | 5 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G29190.1 | 1e-11 | C3H family protein |
Link Out ? help Back to Top | |
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Phytozome | LOC_Os04g41060.1 |
Publications ? help Back to Top | |||
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