PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | LOC_Os04g40140.3 | ||||||||
Common Name | Os04g0477300, OSNPB_040477300 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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Family | NAC | ||||||||
Protein Properties | Length: 209aa MW: 23131.6 Da PI: 4.1484 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 28.2 | 5.4e-09 | 8 | 46 | 90 | 128 |
NAM 90 kevlskkgelvglkktLvfykg.rapkgektdWvmheyrl 128 +++++ +g l+g kk+Lv+ykg +++k ++++Wvmh+y+l LOC_Os04g40140.3 8 QQIYH-NGVLKGWKKILVLYKGsKKNKIVQANWVMHQYNL 46 67888.9999**********996777889*********97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51005 | 14.519 | 1 | 65 | IPR003441 | NAC domain |
SuperFamily | SSF101941 | 2.88E-11 | 8 | 65 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Plant Ontology ? help Back to Top | ||||||
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PO Term | PO Category | PO Description | ||||
PO:0020048 | anatomy | microspore | ||||
PO:0001009 | developmental stage | D pollen mother cell meiosis stage | ||||
PO:0007130 | developmental stage | sporophyte reproductive stage |
Sequence ? help Back to Top |
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Protein Sequence Length: 209 aa Download sequence Send to blast |
MAQNWKIQQI YHNGVLKGWK KILVLYKGSK KNKIVQANWV MHQYNLGVEE GGEDGELVVS 60 KVFYQLSSKQ TGTPEMDSVT EEASDALTIR SDPITPITNP PLPRCLMNSP CDTEQNGTIS 120 HDQEGECSTS TLRPMVEAGN RAGCSAGAST AGDFNEDLLQ RCEFPEDPVP TLDDTLPFLY 180 TDETDLFSWE DFQFGSQESF GWVDGDHT* |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | E-value | ||||
GEO | 32993291 | 0.0 | ||||
Expression Atlas | B7F0X7 | - |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | LOC_Os04g40140.3 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Phenotype -- Mutation ? help Back to Top | ||||||
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Source | ID | |||||
RiceGE | Os04g40140 |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AB630331 | 0.0 | AB630331.1 Oryza sativa Japonica Group BET1 mRNA for transcription factor, complete cds, cultivar: Nipponbare. | |||
GenBank | AK108082 | 0.0 | AK108082.1 Oryza sativa Japonica Group cDNA clone:002-138-G10, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006653523.1 | 2e-75 | PREDICTED: NAC domain-containing protein 8-like | ||||
TrEMBL | B7F0X7 | 1e-155 | B7F0X7_ORYSJ; Os04g0477300 protein | ||||
TrEMBL | Q01JY2 | 1e-155 | Q01JY2_ORYSA; OSIGBa0116M22.6 protein | ||||
STRING | OS04T0477300-01 | 1e-156 | (Oryza sativa) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G25580.1 | 3e-12 | NAC family protein |
Link Out ? help Back to Top | |
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Phytozome | LOC_Os04g40140.3 |