PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LOC_Os04g39960.1
Common NameLOC107277892, Os04g0475400, OSJNBa0022H21.10, OSNPB_040475400
Organism
Oryza sativa subsp. japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family NAC
Protein Properties Length: 283aa    MW: 31081.4 Da    PI: 4.026
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LOC_Os04g39960.1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM41.54.1e-13131551128
               NAM   1 lppGfrFhPtdeelvveyLkkkvegkk...leleevikevdiykvePwdLpk....kvkaeek.ewyfFskrdkkyatgkrknratksgyWka 85 
                       lp G+rF+P+d +++ +yL + + +      +  +v++ vd++ + P  +p     +v ++++ + yfF  + +     + + r +  g W  
  LOC_Os04g39960.1  13 LPWGYRFRPSDRQIIANYLGPMAIHGAdslPQRGDVVEGVDVFATRPAAIPFeprrHVFGRDEvRAYFFGDQPTD----S-RGREVPGGAWLP 100
                       689****************99976665475455578**************9546653333344377999887554....3.4577899****9 PP

               NAM  86 tgkdkevlsk...kgelvglkktLvfy.........kgrapkgektdWvmheyrl 128
                        g   + +s    +ge+v  ++   f           ++a ++ + +W m+eyrl
  LOC_Os04g39960.1 101 CGGGDKAYSGgadGGEAVAYRRKYEFRaaneeadraGEEAATPARPRWRMKEYRL 155
                       99988888877778888*********97776665532467777899*******98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019413.53E-224184IPR003441NAC domain
PROSITE profilePS5100522.99913185IPR003441NAC domain
PfamPF023656.2E-1014155IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 283 aa     Download sequence    Send to blast
MASSAHMAAV LNLPWGYRFR PSDRQIIANY LGPMAIHGAD SLPQRGDVVE GVDVFATRPA  60
AIPFEPRRHV FGRDEVRAYF FGDQPTDSRG REVPGGAWLP CGGGDKAYSG GADGGEAVAY  120
RRKYEFRAAN EEADRAGEEA ATPARPRWRM KEYRLNKSAA EFRRAYAQPN PKANMDCVVR  180
EIYTKAVPPP TPPSGRSGDE EMQEGSDYSV MDEDELVDYL LQGFEDGNFD EDQDQPAAAE  240
DGDYSDEDED QPAAAEDGDY SDEDQDQPAA AEDGDYSDED EP*
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasQ7XKU7
Cis-element ? help Back to Top
SourceLink
PlantRegMapLOC_Os04g39960.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Phenotype -- Mutation ? help Back to Top
Source ID
RiceGEOs04g39960
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAL7315820.0AL731582.2 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0022H21, complete sequence.
GenBankAP0149600.0AP014960.1 Oryza sativa Japonica Group DNA, chromosome 4, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015634860.10.0NAC domain-containing protein 67-like
TrEMBLA0A0E0PAH60.0A0A0E0PAH6_ORYRU; Uncharacterized protein
TrEMBLQ7XKU70.0Q7XKU7_ORYSJ; OSJNBa0022H21.10 protein
STRINGORUFI04G17330.10.0(Oryza rufipogon)
STRINGOS04T0475400-000.0(Oryza sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP128912231
Representative plantOGRP1316635
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G41090.13e-10NAC domain containing protein 95