PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | LOC_Os04g39570.2 | ||||||||
Common Name | WRKY35 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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Family | WRKY | ||||||||
Protein Properties | Length: 784aa MW: 80992.3 Da PI: 6.8198 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 96.9 | 1.3e-30 | 290 | 347 | 2 | 60 |
--SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS-- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhek 60 +Dgy+WrKYGqK+vk se+prsYY+Ct+a+C vkkkvers+ +++v+ei+Y+g+Hnh+k LOC_Os04g39570.2 290 EDGYSWRKYGQKQVKHSEYPRSYYKCTHASCAVKKKVERSH-EGHVTEIIYKGTHNHPK 347 8****************************************.***************85 PP | |||||||
2 | WRKY | 33.4 | 9e-11 | 521 | 543 | 1 | 23 |
---SS-EEEEEEE--TT-SS-EE CS WRKY 1 ldDgynWrKYGqKevkgsefprs 23 ldDgy+WrKYGqK+vkg+++p s LOC_Os04g39570.2 521 LDDGYRWRKYGQKVVKGNPNPSS 543 59******************976 PP | |||||||
3 | WRKY | 54.1 | 3.2e-17 | 560 | 597 | 22 | 59 |
EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 22 rsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 rsYY+Ct++gC v+k+ver+++d k v++tYeg+Hnhe LOC_Os04g39570.2 560 RSYYKCTHPGCLVRKHVERASHDLKSVITTYEGKHNHE 597 9************************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.20.25.80 | 7.5E-28 | 278 | 348 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 23.571 | 284 | 348 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 7.98E-25 | 285 | 348 | IPR003657 | WRKY domain |
SMART | SM00774 | 6.1E-33 | 289 | 347 | IPR003657 | WRKY domain |
Pfam | PF03106 | 1.9E-23 | 290 | 346 | IPR003657 | WRKY domain |
Gene3D | G3DSA:2.20.25.80 | 1.7E-34 | 506 | 599 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 1.1E-23 | 513 | 599 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 31.158 | 516 | 599 | IPR003657 | WRKY domain |
SMART | SM00774 | 2.5E-33 | 521 | 598 | IPR003657 | WRKY domain |
Pfam | PF03106 | 2.2E-6 | 522 | 543 | IPR003657 | WRKY domain |
Pfam | PF03106 | 3.3E-11 | 560 | 597 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 784 aa Download sequence Send to blast |
MEGDIAMEEW KDSNHRGADY LMTMPMQNFL ADAFPPPELL EGEGGFEKHG LSVAVGSPPP 60 TPPPPEDGCS PLPLTPQFGQ KFGSGGGGGG SLADRRARGG FSNVARISVP YNQPAADVSS 120 AGAPSPYVTI PPGLSPTTLL ESPVFSNAMG QASPTTGKLH MLGGANDSNP IRFESPRIEE 180 GSGAFSFKPL NLASSHYAAE EKTKSLPNNQ HQSLPISVKT EATSIQTAQD EAAANQLMQP 240 QFNGGKRSRA APDNGGDGEG QPAEGDAKAD SSSGAAAVAV VAAAAAAVAE DGYSWRKYGQ 300 KQVKHSEYPR SYYKCTHASC AVKKKVERSH EGHVTEIIYK GTHNHPKPAA SRRPPVHPPP 360 PSPATTTTTP LPPGDAQADH APDGGGGSTP VGAGQAGAEW HNGGVVGGEG LVDATSSPSV 420 PGELCESTAS MQVHEGAAAA QLGESPEGVD VTSAVSDEVD RDDKATHVLP LAAAAADGES 480 DELERKRRKL DSCATMDMST ASRAVREPRV VIQTTSEVDI LDDGYRWRKY GQKVVKGNPN 540 PSSSSSMDAD RSLVVVVVIR SYYKCTHPGC LVRKHVERAS HDLKSVITTY EGKHNHEVPA 600 ARNSGHPAGS ASPGGGAGSS SQPHGVGVGG RRPEVPSVQE SLMRLGGGCG AAPFPPHFGL 660 HLPPPPPRDP LAPMSNFPYS LGHAPSPALR GLPPPPPPPP SASALAVAGL GGVVEGLKYP 720 MLAPPSVHSL LRHRQGGGME AVVVPKAEVK QEAMRPAAAV AGAGRGAAVY QQAMSRVSLG 780 NQL* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1wj2_A | 4e-32 | 272 | 600 | 2 | 78 | Probable WRKY transcription factor 4 |
2lex_A | 4e-32 | 272 | 600 | 2 | 78 | Probable WRKY transcription factor 4 |
Search in ModeBase |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | E-value | ||||
GEO | 33519173 | 0.0 | ||||
Expression Atlas | Q7XAA6 | - |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | LOC_Os04g39570.2 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Phenotype -- Mutation ? help Back to Top | ||||||
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Source | ID | |||||
RiceGE | Os04g39570 |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AY341851 | 0.0 | AY341851.1 Oryza sativa (japonica cultivar-group) WRKY10 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015634497.1 | 0.0 | probable WRKY transcription factor 2 isoform X2 | ||||
TrEMBL | Q7XAA6 | 0.0 | Q7XAA6_ORYSJ; WRKY transcription factor 35 | ||||
STRING | OS04T0471700-00 | 0.0 | (Oryza sativa) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G56270.1 | 2e-86 | WRKY DNA-binding protein 2 |
Link Out ? help Back to Top | |
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Phytozome | LOC_Os04g39570.2 |
Publications ? help Back to Top | |||
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