PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LOC_Os04g39520.1
Organism
Oryza sativa subsp. japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family C2H2
Protein Properties Length: 714aa    MW: 73236.5 Da    PI: 8.1189
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LOC_Os04g39520.1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H211.70.00081189210223
                       EETTTTEEESSHHHHHHHHHHT CS
           zf-C2H2   2 kCpdCgksFsrksnLkrHirtH 23 
                       +Cp Cgk+F +   +  H+r+H
  LOC_Os04g39520.1 189 TCPECGKVFMSDKAMYGHLRSH 210
                       8*******************99 PP
2zf-C2H2130.00032463485123
                       EEETTTTEEESSHHHHHHHHHHT CS
           zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                       y+C+ C+k+Fs++  L  H   H
  LOC_Os04g39520.1 463 YECSECHKTFSTHQALGGHVAAH 485
                       99***********9998887666 PP
3zf-C2H211.10.0012573595123
                       EEETTTTEEESSHHHHHHHHHHT CS
           zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                       ++C  C+++F++   L  H+r+H
  LOC_Os04g39520.1 573 HQCLRCPMVFPTGQALGGHMRKH 595
                       79********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003550.0066188210IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.887188215IPR007087Zinc finger, C2H2
SuperFamilySSF576675.05E-8189210No hitNo description
PfamPF139122.1E-5190210IPR007087Zinc finger, C2H2
PROSITE patternPS000280190210IPR007087Zinc finger, C2H2
SuperFamilySSF576675.05E-8458485No hitNo description
PfamPF139122.1E-7463487IPR007087Zinc finger, C2H2
PROSITE profilePS5015711.822463490IPR007087Zinc finger, C2H2
SMARTSM003550.02463485IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280465485IPR007087Zinc finger, C2H2
PfamPF139127.7E-6573595IPR007087Zinc finger, C2H2
SMARTSM003550.12573595IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280575595IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 714 aa     Download sequence    Send to blast
MAASGQVQCL LPLRVALSPP LPPWPPATMV MPPLLAAAAA MAASGQVRRL LSLRAALPSP  60
WPLATMAPSS SRHRHHGCRC PGFQYAFVRE KAAGDHLSLG YMQHGDNNNK KKKGDLSNNL  120
DLSSSPLLMD SRGQAYYHRA AAAAAAVAAG DATDGEEPAA AELAPKAVRS KKKLAVEAQG  180
GAAVRDDLTC PECGKVFMSD KAMYGHLRSH PLRKHKGAAR LAAVAAAAAD DASVAAGVKP  240
RPWKVPRTKE EAELGDDRHP GRSPVTGKRG RPASSASSSG SAPAPAPPAS SRLQLVITEE  300
EEAAMTLLDI ASGCSLDHQP TQPAHVADAA LLAPASDQMP SVDVEQGVLA VAEHRTWEAE  360
KPALVEHVFG IVKEHVAAVA ADAEPQSPEA KTPVKLGPVT DQAVPVLGDK NDDGHADMPV  420
SPGGGTTKKP LKRRLQDVET KHPTAPPPPP VKRIPSPASK RKYECSECHK TFSTHQALGG  480
HVAAHKRQKK SCAEQQQEAV AAAAQVARHN FLAHQRPAGV VVAVDATVVA AAGGGIAIGP  540
LGEEGLVGPP PPPPPPPPPP APAPALAPAP QQHQCLRCPM VFPTGQALGG HMRKHFLEAK  600
EQEQLLAIDI ANANANANAN AAPGPPPMMA NAAPVPPPSM ANGAGPVPPP IAVAPPPAPP  660
IAGAAPPPPM ANGAAAAAPP GGNPAPPAGP QPGVNMFDLN ELPNEDAGEN QQP*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1427434KKPLKRRL
Cis-element ? help Back to Top
SourceLink
PlantRegMapLOC_Os04g39520.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Phenotype -- Mutation ? help Back to Top
Source ID
RiceGEOs04g39520
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAL6064410.0AL606441.3 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0089K21, complete sequence.
GenBankAP0149600.0AP014960.1 Oryza sativa Japonica Group DNA, chromosome 4, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025880741.10.0zinc finger protein 628-like
TrEMBLA0A0E0H2000.0A0A0E0H200_ORYNI; Uncharacterized protein
STRINGONIVA04G13840.10.0(Oryza nivara)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP1819399
Representative plantOGRP1097248