PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LOC_Os04g39050.1
Common NameLOC4336084, Os04g0464600, OsJ_15091, OSJNBa0060P14.11, OSJNBb0048E02.2, OSNPB_040464600
Organism
Oryza sativa subsp. japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family C2H2
Protein Properties Length: 332aa    MW: 36354.4 Da    PI: 10.315
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LOC_Os04g39050.1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H214.78.7e-05106123320
                       ETTTTEEESSHHHHHHHH CS
           zf-C2H2   3 CpdCgksFsrksnLkrHi 20 
                       C  Cg++F+ +++L rH 
  LOC_Os04g39050.1 106 CRVCGRRFRARDTLLRHF 123
                       *****************6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5015711.177104132IPR007087Zinc finger, C2H2
PROSITE patternPS000280106127IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0025281anatomypollen
PO:0001015developmental stageK second mitotic division stage
PO:0007130developmental stagesporophyte reproductive stage
Sequence ? help Back to Top
Protein Sequence    Length: 332 aa     Download sequence    Send to blast
MFPPFSHLRR RLLAAIPNPN LLLRPSRSLS TSTTPATRAP ATPVAVLWDL AASRPPSTLP  60
LYDAAVRLHL AATSFGRVRL SAAFVHPGHR LPAPSPSAAA AAVHLCRVCG RRFRARDTLL  120
RHFDAIHARE HAKRLARIDS SRGDRRVRLA AALSLKLSKY EKAARELTAA ADPCSPADDL  180
RRARVAVELS PTPSVSLLER AHEVLDGGSV RCLMLVSARD ELAPLLRLAR EKGVRSVVVG  240
GESGPARWAD VGFSWAEVIA GKARKAAPSV SGKWRDRDVL KRLEWRYDDD DEEVVFEEDG  300
DEDGIDELTR NSKGKPWWKL ESDGEDSSAC R*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Os.888370.0panicle| root| stem
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO329908430.0
Expression AtlasQ7X666-
Cis-element ? help Back to Top
SourceLink
PlantRegMapLOC_Os04g39050.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Phenotype -- Mutation ? help Back to Top
Source ID
RiceGEOs04g39050
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAL6066530.0AL606653.3 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBb0048E02, complete sequence.
GenBankAL6630170.0AL663017.3 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0060P14, complete sequence.
GenBankAP0149600.0AP014960.1 Oryza sativa Japonica Group DNA, chromosome 4, cultivar: Nipponbare, complete sequence.
GenBankCP0126120.0CP012612.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 4 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015636930.10.0uncharacterized protein LOC4336084
TrEMBLA0A0D3FWS20.0A0A0D3FWS2_9ORYZ; Uncharacterized protein
TrEMBLQ01JD80.0Q01JD8_ORYSA; OSIGBa0130P02.1 protein
TrEMBLQ7X6660.0Q7X666_ORYSJ; OSJNBa0060P14.11 protein
STRINGOS04T0464600-010.0(Oryza sativa)
STRINGOBART04G15260.10.0(Oryza barthii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP122342023
Representative plantOGRP1622422
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G12240.11e-38C2H2 family protein