PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | LOC_Os04g37440.1 | ||||||||
Common Name | Os04g0447232, OSNPB_040447232 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
|
||||||||
Family | GRAS | ||||||||
Protein Properties | Length: 153aa MW: 16672.2 Da PI: 9.7059 | ||||||||
Description | GRAS family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GRAS | 46.7 | 5.3e-15 | 2 | 66 | 259 | 323 |
GRAS 259 ealeyysalfdsl.eaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaG 323 + l+yy a fd++ +a+l ++ +r+kvE++ ++rei+n+va egaer+erhe+++ r+r+e+ G LOC_Os04g37440.1 2 HYLRYYDAAFDAVdAAGLLETRPARAKVEEM-FAREIRNAVAFEGAERFERHESFAGRRRRMEDGG 66 679**********9999**************.******************************9976 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03514 | 1.8E-12 | 2 | 66 | IPR005202 | Transcription factor GRAS |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 153 aa Download sequence Send to blast |
MHYLRYYDAA FDAVDAAGLL ETRPARAKVE EMFAREIRNA VAFEGAERFE RHESFAGRRR 60 RMEDGGGLQW GSKAEEKCLL PSSSLARRPR RQPSPPVSLR PDGSLPPAVA AAPLVLPLPR 120 ASAAEPPRCA PMPPTAAPLV LPPPLPTEKE RI* |
Nucleic Localization Signal ? help Back to Top | |||
---|---|---|---|
No. | Start | End | Sequence |
1 | 47 | 60 | RFERHESFAGRRRR |
Expression -- UniGene ? help Back to Top | ||||||
---|---|---|---|---|---|---|
UniGene ID | E-value | Expressed in | ||||
Os.89110 | 4e-69 | callus| flower| panicle |
Expression -- Microarray ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | ID | E-value | ||||
GEO | 115466135 | 4e-69 | ||||
Expression Atlas | A0A0P0WB67 | - |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | LOC_Os04g37440.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Phenotype -- Mutation ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | ID | |||||
RiceGE | Os04g37440 |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | AL606448 | 0.0 | AL606448.3 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0064H22, complete sequence. | |||
GenBank | AP014960 | 0.0 | AP014960.1 Oryza sativa Japonica Group DNA, chromosome 4, cultivar: Nipponbare, complete sequence. | |||
GenBank | CP012612 | 0.0 | CP012612.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 4 sequence. | |||
GenBank | CR855179 | 0.0 | CR855179.1 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSIGBa0152K17, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
TrEMBL | A0A0E0P9S7 | 1e-101 | A0A0E0P9S7_ORYRU; Uncharacterized protein | ||||
TrEMBL | A0A0P0WB67 | 1e-101 | A0A0P0WB67_ORYSJ; Os04g0447232 protein | ||||
STRING | ORUFI04G15420.1 | 1e-102 | (Oryza rufipogon) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP26001 | 5 | 5 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT1G63100.1 | 5e-06 | GRAS family protein |
Link Out ? help Back to Top | |
---|---|
Phytozome | LOC_Os04g37440.1 |