PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LOC_Os04g36590.1
Common NameLOC4335941, Os04g0443000, OSNPB_040443000
Organism
Oryza sativa subsp. japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family FAR1
Protein Properties Length: 692aa    MW: 77871.4 Da    PI: 7.5866
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LOC_Os04g36590.1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR149.61.3e-1565165289
              FAR1   2 fYneYAkevGFsvrkskskks.krngeitkrtfvCskegkreeekkk...tekerrtraetrtgCkaklkvkkek.........dgkwevtkl 81 
                        Y+ +A++ GFs+r+++++ +    +  t+r fvC + g++  +  +    ++ +r+r ++r+gCka +++ ++          +g+w+vt +
  LOC_Os04g36590.1  65 LYSGFARRRGFSIRRHRTEGKdGVGRGLTRRYFVCHRAGNPPAKPFAagaGDRPQRNRRSSRCGCKAYMRIGRSAiaaaaageaEGEWRVTGF 157
                       79************9998877355667999**********9999888777788899**************9875333333445689******* PP

              FAR1  82 eleHnHel 89 
                       +++HnHel
  LOC_Os04g36590.1 158 SNHHNHEL 165
                       *******9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031014.7E-1365166IPR004330FAR1 DNA binding domain
PfamPF105517.0E-17288379IPR018289MULE transposase domain
PROSITE profilePS509669.631566602IPR007527Zinc finger, SWIM-type
PfamPF044344.2E-6572602IPR007527Zinc finger, SWIM-type
SMARTSM005756.3E-4577604IPR006564Zinc finger, PMZ-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0025281anatomypollen
PO:0001015developmental stageK second mitotic division stage
PO:0007130developmental stagesporophyte reproductive stage
Sequence ? help Back to Top
Protein Sequence    Length: 692 aa     Download sequence    Send to blast
MMPAGSASLL LECYGGDPPL SSMEGTSSGE EVEDGTGPSP EAEEDDDPAP YVGQRFPTHD  60
AAHELYSGFA RRRGFSIRRH RTEGKDGVGR GLTRRYFVCH RAGNPPAKPF AAGAGDRPQR  120
NRRSSRCGCK AYMRIGRSAI AAAAAGEAEG EWRVTGFSNH HNHELLGQDQ VRLLPAYRVV  180
SGDDRDRILM LARSGISVQQ MMRIMELERR VEPGNLPFTE KDVRNLIQSC RKSDQEESVD  240
LIKMCRRFQE KDPDFKYEFT KGASNRVENV AWSFASSVQS YEMFGDAVVF NTTHRLPALD  300
MLLGIWVGLN NHGMPCFFGC AFLREESLQS YAWALKVFLN FMNRKAPLTI LTDENMYLKE  360
AIEKELPGTK QALCIWLIAA RFPSWFDAVL GERYNSWKDE FDRLYNMEST MEFDLGWSDM  420
MNSYGLHGNG HIASLFASRT LWALPYLRGQ FFAGLLASPE TSKSISVFIQ RFSSAQTRLA  480
HFIEQVAVVA EYKDQAGRQQ MMQHNLQSIT LKTATPMERH AAAVLTPYAF SKLQDELVVA  540
CQYASFHLEG NVFLVRHHTK TEDGGCNVTW SQREELISCS CNMFESAGIL CRHGLRVLST  600
LNYFQIPDHY LPPRWRRTWP SPSKALNGAY FHESPEIGRV KALQSMVSAL VSEASKSTER  660
MDIATREVSA LLSRMRQQPV VMHVSGDGVH K*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Os.538710.0callus| flower| panicle
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO329857420.0
Expression AtlasQ0JCY7-
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in hypocotyls, rosette and cauline leaves, inflorescences stems, flowers and siliques. {ECO:0000269|PubMed:15591448}.
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription activator involved in regulating light control of development.
Cis-element ? help Back to Top
SourceLink
PlantRegMapLOC_Os04g36590.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Up-regulated in hypocotyls by far-red light treatment. {ECO:0000269|PubMed:15591448}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Phenotype -- Mutation ? help Back to Top
Source ID
RiceGEOs04g36590
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1005330.0AK100533.1 Oryza sativa Japonica Group cDNA clone:J023101L24, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015636061.10.0protein FAR1-RELATED SEQUENCE 11
SwissprotQ9SY660.0FRS11_ARATH; Protein FAR1-RELATED SEQUENCE 11
TrEMBLQ0JCY70.0Q0JCY7_ORYSJ; Os04g0443000 protein
STRINGOS04T0443000-010.0(Oryza sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP151711516
Representative plantOGRP3012351
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G10240.10.0FAR1-related sequence 11
Publications ? help Back to Top
  1. Joly-Lopez Z, et al.
    Abiotic Stress Phenotypes Are Associated with Conserved Genes Derived from Transposable Elements.
    Front Plant Sci, 2017. 8: p. 2027
    [PMID:29250089]