PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LOC_Os04g35500.1
Common NameLOC4335893, Os04g0434500, OSNPB_040434500
Organism
Oryza sativa subsp. japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family ZF-HD
Protein Properties Length: 285aa    MW: 29043.4 Da    PI: 8.1747
Description ZF-HD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LOC_Os04g35500.1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1ZF-HD_dimer88.18.6e-282370557
       ZF-HD_dimer  5 rYkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRrev 57
                      +YkeC++NhAa++Gg+a+DGCgE+mp+     ++++lkCaACgCHR+FHRr  
  LOC_Os04g35500.1 23 KYKECMRNHAAAMGGQAFDGCGEYMPA-----SPDSLKCAACGCHRSFHRRAA 70
                      7*************************9.....799****************86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
TIGRFAMsTIGR015662.5E-242369IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
ProDomPD1257741.0E-202368IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PfamPF047701.5E-222369IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PROSITE profilePS5152326.0482469IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
SuperFamilySSF466893.68E-18152222IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.602.4E-28156223IPR009057Homeodomain-like
TIGRFAMsTIGR015651.1E-26164221IPR006455Homeodomain, ZF-HD class
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0009049anatomyinflorescence
PO:0001083developmental stageinflorescence development stage
PO:0007006developmental stageIL.00 inflorescence just visible stage
Sequence ? help Back to Top
Protein Sequence    Length: 285 aa     Download sequence    Send to blast
MMDHLSLVPY EGGSAGGGGG GGKYKECMRN HAAAMGGQAF DGCGEYMPAS PDSLKCAACG  60
CHRSFHRRAA AGIGGGPVFF RPPPPPQPHS HHAALQGFLP SSVPAPAPPP QLALPYHAVP  120
AAAWHHAAAA AAGRAGSETP PRMDDFGPGS AGGSGSGGGG IFGRKRFRTK FTPEQKERMR  180
EFAEKQGWRI NRNDDGALDR FCVEIGVKRH VLKVWMHNHK NQLASSPTSA AAAAAGVMNP  240
GAGIGLGTGL GTGISGDGDG DDDDTDDSPP RAAVSSPSPS PISV*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wh7_A3e-241652301880ZF-HD homeobox family protein
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Os.612270.0panicle
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO1154584830.0
Expression AtlasA0A0P0WAN4-
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription factor. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapLOC_Os04g35500.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Phenotype -- Mutation ? help Back to Top
Source ID
RiceGEOs04g35500
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAL6066260.0AL606626.3 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0088K19, complete sequence.
GenBankAL6067060.0AL606706.3 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBb0086G13, complete sequence.
GenBankAP0149600.0AP014960.1 Oryza sativa Japonica Group DNA, chromosome 4, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015635194.10.0zinc-finger homeodomain protein 8
SwissprotQ7X7N30.0ZHD8_ORYSJ; Zinc-finger homeodomain protein 8
TrEMBLA0A0P0WAN40.0A0A0P0WAN4_ORYSJ; Os04g0434500 protein
STRINGOS04T0434500-000.0(Oryza sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP136492225
Representative plantOGRP9116237
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G75240.16e-20homeobox protein 33