PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LOC_Os04g35250.1
Common NameOs04g0432100, OSJNBa0084A10.13, OSNPB_040432100
Organism
Oryza sativa subsp. japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family GRAS
Protein Properties Length: 505aa    MW: 52579.9 Da    PI: 8.4212
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LOC_Os04g35250.1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS2422.5e-74864951374
              GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdg..dpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPil 91 
                       lv+lLl+++ a ++gd+++a a+L ++  +as +g  dp qR+aa+++ ALa rla    +l  a ++ +++    +e++ a+++f+++sP++
  LOC_Os04g35250.1  86 LVRLLLSAVAAGEAGDARAAAAALREVDRRASCRGggDPAQRVAACYAAALAPRLAA---GLRPARSSPAAPAAARAEQFLAYTMFYQASPFY 175
                       6899**************************99998789******************9...44444444444444589999************* PP

              GRAS  92 kfshltaNqaIleavege..ervHiiDfdisqGlQWpaLlqaLasRpeg...................ppslRiTgvgspesgskeeleetge 163
                       +f+h+taNqaI+ea+e+   +r+H++Dfd+s+G+QWp+L+q+L++ ++                    p slRiTg+g+    s++el+et+ 
  LOC_Os04g35250.1 176 QFAHFTANQAIVEAFESGgrRRLHVVDFDVSYGFQWPSLIQSLSDAAAAatsssshddddngggcgdgPVSLRITGFGA----SADELRETEA 264
                       ***************9876699*********************988744455677888888999999788*********....9********* PP

              GRAS 164 rLakfAeel.gvpfefnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqe.....adhns 250
                       rL++fA+ + +++fef+  + ++ ++ + +  r++ + +++Vnlv+   +     ++      + +  ++sl+P +v ++e+      +    
  LOC_Os04g35250.1 265 RLRRFAAGCpNLRFEFEG-ILNNGSNTRHDCTRIDDDATVVVNLVFPASSRE---AC----AATRMAYINSLNPSMVFLIEKHdggggL---- 345
                       *****998769*******.6999***********************655553...22....234699**************97555431.... PP

              GRAS 251 e...........sFlerflealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetle..........kWrerleea 322
                       +           s+l rf+  l+y++a+fdsl++ lp++s er  +Er  lgrei ++va    ++r rh   +          +W++++e a
  LOC_Os04g35250.1 346 TggdntttgrsaSLLPRFAANLRYFAAVFDSLHECLPADSAERLAIERDHLGREIADAVASLDHQHRRRHGGGGgggdhaaaswNWKAAMEGA 438
                       133455566777*************************************************9999999996533222222233389******* PP

              GRAS 323 GFkpvplsekaakqaklllrkvk...sdgyrveeesgslv..lgWkdrpLvsvSaWr 374
                       G+  v+ls+++++qaklll++ +   + g+rv e +g +   l W+d +L +++ Wr
  LOC_Os04g35250.1 439 GLDGVKLSSRTVSQAKLLLKMKSgcgGGGFRVVEGDGGMAmsLAWRDMALATATLWR 495
                       *******************9977422455***9998877668**************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098546.51660470IPR005202Transcription factor GRAS
PfamPF035148.6E-7286495IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0009005anatomyroot
Sequence ? help Back to Top
Protein Sequence    Length: 505 aa     Download sequence    Send to blast
MNLKLSLAID GGGGGDAAAA VAKKSKVVGG GAVVVDGVGS SAICGGDRGS RVRDRMVKKA  60
EEFDHENGMA ATSSDGGGGG GGGMELVRLL LSAVAAGEAG DARAAAAALR EVDRRASCRG  120
GGDPAQRVAA CYAAALAPRL AAGLRPARSS PAAPAAARAE QFLAYTMFYQ ASPFYQFAHF  180
TANQAIVEAF ESGGRRRLHV VDFDVSYGFQ WPSLIQSLSD AAAAATSSSS HDDDDNGGGC  240
GDGPVSLRIT GFGASADELR ETEARLRRFA AGCPNLRFEF EGILNNGSNT RHDCTRIDDD  300
ATVVVNLVFP ASSREACAAT RMAYINSLNP SMVFLIEKHD GGGGLTGGDN TTTGRSASLL  360
PRFAANLRYF AAVFDSLHEC LPADSAERLA IERDHLGREI ADAVASLDHQ HRRRHGGGGG  420
GGDHAAASWN WKAAMEGAGL DGVKLSSRTV SQAKLLLKMK SGCGGGGFRV VEGDGGMAMS  480
LAWRDMALAT ATLWRRRRRR RRCR*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_A7e-359949731380Protein SCARECROW
5b3h_D7e-359949731380Protein SCARECROW
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1494501RRRRRRRR
2495501RRRRRRR
3496503RRRRRRCR
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO2976027550.0
Expression AtlasQ7XQP2-
Cis-element ? help Back to Top
SourceLink
PlantRegMapLOC_Os04g35250.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Phenotype -- Mutation ? help Back to Top
Source ID
RiceGEOs04g35250
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAL6064580.0AL606458.5 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0084A10, complete sequence.
GenBankAP0149600.0AP014960.1 Oryza sativa Japonica Group DNA, chromosome 4, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015634839.10.0protein MONOCULM 1
TrEMBLQ01LC90.0Q01LC9_ORYSA; B0308C03.2 protein
TrEMBLQ7XQP20.0Q7XQP2_ORYSJ; OSJNBa0084A10.13 protein
STRINGOS04T0432100-000.0(Oryza sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP116493038
Representative plantOGRP81961117
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G63100.12e-30GRAS family protein