PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LOC_Os04g35010.1
Common NameLOC4335859, Os04g0429400, OSNPB_040429400
Organism
Oryza sativa subsp. japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family bHLH
Protein Properties Length: 334aa    MW: 35316 Da    PI: 9.3515
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LOC_Os04g35010.1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH35.71.6e-11115158855
                       HHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS
               HLH   8 rErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 
                        Er RR+++++ f++L  llPk +     +K +Ka+i+ +A+ YIk L+
  LOC_Os04g35010.1 115 TERERRKKMKNMFSTLHGLLPKiP-----GKTDKASIVGEAIGYIKTLE 158
                       7*********************88.....9****************995 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088813.884107157IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474593.66E-15111169IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.106.8E-14112168IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000834.91E-11112162No hitNo description
SMARTSM003531.8E-7115163IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000104.2E-9115158IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009793Biological Processembryo development ending in seed dormancy
GO:0046983Molecular Functionprotein dimerization activity
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0009089anatomyendosperm
PO:0007042developmental stagewhole plant fruit formation stage
PO:0007633developmental stageendosperm development stage
Sequence ? help Back to Top
Protein Sequence    Length: 334 aa     Download sequence    Send to blast
MSQEGADLSQ DVDESPYHTA VVTTNNLVRS IKAEKSNSSS SSGKPVETDI GLKVASPTMF  60
GFNTKIEGTG KNMAVKREEG EGGGRPGVSS GVSTRDTNGK GKNAMDMEHA LHIWTERERR  120
KKMKNMFSTL HGLLPKIPGK TDKASIVGEA IGYIKTLEDV VQKLETIKTE RVRAHQWAAA  180
AAAAVAANGG GEGSSHSHSQ PPRHATAVTV AVAEPAPVAA AVNAQAPQKK AAAAAAPTLQ  240
TWSAPNITLT MAGVDAFINM CLPRQRASFT TVAFVLEKHQ IDVVTSTISA DHDKSLFSVH  300
VRLNEASLQS TEGLTPEAKY KLAVSELMVR LAE*
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO329939370.0
Expression AtlasQ0JD63-
Cis-element ? help Back to Top
SourceLink
PlantRegMapLOC_Os04g35010.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Phenotype -- Mutation ? help Back to Top
Source ID
RiceGEOs04g35010
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1087280.0AK108728.1 Oryza sativa Japonica Group cDNA clone:002-150-C12, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015636599.10.0transcription factor bHLH95
TrEMBLQ01LG20.0Q01LG2_ORYSA; OSIGBa0093L02.5 protein
TrEMBLQ0JD630.0Q0JD63_ORYSJ; Os04g0429400 protein
STRINGOS04T0429400-010.0(Oryza sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP20053691
Representative plantOGRP12261548
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G49770.14e-22bHLH family protein