PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LOC_Os04g33440.2
Common NameLOC4335761, Os04g0408700, OsJ_14704, OSJNBa0042I15.16, S1FA2
Organism
Oryza sativa subsp. japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family S1Fa-like
Protein Properties Length: 81aa    MW: 8881.59 Da    PI: 10.5244
Description S1Fa-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LOC_Os04g33440.2genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1S1FA139.95.2e-441180270
              S1FA  2 avakvea.kGlnPGlivllvvgglllvflvgnyilyvyaqknlPPrkkkPvskkklkreklkqGvavPGe 70
                      +v+++e+ kGlnPG+ivl+vv+++ll+f+vgny+lyvyaqk+lPPrkkkPvskkk+kreklkqGv++PGe
  LOC_Os04g33440.2 11 NVVIEEVnKGLNPGMIVLIVVATFLLLFFVGNYALYVYAQKTLPPRKKKPVSKKKMKREKLKQGVSAPGE 80
                      67788888*************************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
ProDomPD0190131.0E-181280No hitNo description
PfamPF046895.6E-411680IPR006779DNA binding protein S1FA
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0009089anatomyendosperm
PO:0007042developmental stagewhole plant fruit formation stage
PO:0007633developmental stageendosperm development stage
Sequence ? help Back to Top
Protein Sequence    Length: 81 aa     Download sequence    Send to blast
MADQFADSAN NVVIEEVNKG LNPGMIVLIV VATFLLLFFV GNYALYVYAQ KTLPPRKKKP  60
VSKKKMKREK LKQGVSAPGE *
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasQ7XLX6
Functional Description ? help Back to Top
Source Description
UniProtDNA-binding protein that specifically recognizes a negative element (S1F) within the RPS1 promoter. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapLOC_Os04g33440.2
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Phenotype -- Mutation ? help Back to Top
Source ID
RiceGEOs04g33440
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1212051e-133AK121205.1 Oryza sativa Japonica Group cDNA clone:J023087P18, full insert sequence.
GenBankBT1310311e-133BT131031.1 Oryza sativa clone RRlibC00345 mRNA sequence.
GenBankCT8339931e-133CT833993.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCFA333Z77, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015633609.12e-51DNA-binding protein S1FA2
SwissprotQ7XLX62e-52S1FA2_ORYSJ; DNA-binding protein S1FA2
TrEMBLA0A0D3FVJ52e-50A0A0D3FVJ5_9ORYZ; Uncharacterized protein
STRINGOBART04G11650.13e-51(Oryza barthii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP51543563
Representative plantOGRP50951322
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G37120.12e-12S1FA-like DNA-binding protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]