PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LOC_Os04g33420.1
Common NameLOC4335762, Os04g0408900, OsJ_14705, OSJNBa0042I15.18, S1FA, S1FA1
Organism
Oryza sativa subsp. japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family S1Fa-like
Protein Properties Length: 77aa    MW: 8473.17 Da    PI: 10.6608
Description S1Fa-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LOC_Os04g33420.1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1S1FA131.71.9e-41976470
              S1FA  4 akvea.kGlnPGlivllvvgglllvflvgnyilyvyaqknlPPrkkkPvskkklkreklkqGvavPGe 70
                       ++e+ kGlnPG ivllvv++ll++f+vgny+ly+yaqk+lPPrkkkPvskkklkreklkqGv++PGe
  LOC_Os04g33420.1  9 IIEEVnKGLNPGTIVLLVVATLLILFFVGNYALYMYAQKTLPPRKKKPVSKKKLKREKLKQGVSAPGE 76
                      456777*************************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
ProDomPD0190134.0E-9876No hitNo description
PfamPF046892.6E-391276IPR006779DNA binding protein S1FA
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0009089anatomyendosperm
PO:0007042developmental stagewhole plant fruit formation stage
PO:0007633developmental stageendosperm development stage
Sequence ? help Back to Top
Protein Sequence    Length: 77 aa     Download sequence    Send to blast
MADQSNNMII EEVNKGLNPG TIVLLVVATL LILFFVGNYA LYMYAQKTLP PRKKKPVSKK  60
KLKREKLKQG VSAPGE*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Os.464791e-128callus| flower| leaf| panicle
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasP42553
Functional Description ? help Back to Top
Source Description
UniProtDNA-binding protein that specifically recognizes a negative element (S1F) within the RPS1 promoter. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapLOC_Os04g33420.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Phenotype -- Mutation ? help Back to Top
Source ID
RiceGEOs04g33420
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK2891331e-126AK289133.1 Oryza sativa Japonica Group cDNA, clone: J090099A10, full insert sequence.
GenBankBT1291571e-126BT129157.1 Oryza sativa clone RRlibA00156 mRNA sequence.
GenBankBT1305261e-126BT130526.1 Oryza sativa clone RRlibC01181 mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015633416.14e-48DNA-binding protein S1FA1
SwissprotP425533e-49S1FA1_ORYSJ; DNA-binding protein S1FA1
TrEMBLA0A0E0P8S55e-47A0A0E0P8S5_ORYRU; Uncharacterized protein
STRINGORUFI04G12850.19e-48(Oryza rufipogon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP51543563
Representative plantOGRP50951322