PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LOC_Os04g32790.1
Common NameLOC4335720, Os04g0399800, OSJNBb0014D23.10, OSNPB_040399800
Organism
Oryza sativa subsp. japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family ERF
Protein Properties Length: 293aa    MW: 29764.3 Da    PI: 4.3061
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LOC_Os04g32790.1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP258.51.6e-1850101156
               AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 
                       ++y GVr+++ +gr++AeIrdp +   + r++lg+f+taeeAa a+++a+++l+g+
  LOC_Os04g32790.1  50 TRYLGVRRRP-WGRYAAEIRDPAT---KERHWLGTFDTAEEAAVAYDRAARSLRGA 101
                       5799******.**********843...4*************************995 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000181.62E-2950109No hitNo description
PfamPF008471.1E-1051100IPR001471AP2/ERF domain
SuperFamilySSF541714.64E-2151108IPR016177DNA-binding domain
SMARTSM003803.1E-3251114IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.0E-2851108IPR001471AP2/ERF domain
PROSITE profilePS5103221.56251108IPR001471AP2/ERF domain
PRINTSPR003671.6E-85263IPR001471AP2/ERF domain
PRINTSPR003671.6E-87490IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009739Biological Processresponse to gibberellin
GO:0010030Biological Processpositive regulation of seed germination
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0009038anatomypalea
PO:0001048developmental stagepalea development stage
PO:0007130developmental stagesporophyte reproductive stage
Sequence ? help Back to Top
Protein Sequence    Length: 293 aa     Download sequence    Send to blast
MMNFSSYFYS SSAAAAGGGG GGGEKKSSSS SASKKKQQQA AAAEGGNNQT RYLGVRRRPW  60
GRYAAEIRDP ATKERHWLGT FDTAEEAAVA YDRAARSLRG ARARTNFAYP DLPPGSSVTP  120
YLSPDLSADA SDQLLQPFYA NPSAAAALPT PAAVMAGGGG VEFGGEYMYG GGVDMSSLMD  180
DIAAMPDDLP PSVTGGGGGF ASSDEYSSGG GGMVDDVSMY CGGNGGGSSW CDASDFASYS  240
SSSPAAAAAA GSHGMYFEEG YVHSPLFSPM PAVDDAGADG FQLGGSSSSY YY*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A5e-1852107662ATERF1
3gcc_A5e-1852107662ATERF1
Search in ModeBase
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasQ7XL79
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00509DAPTransfer from AT5G13910Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapLOC_Os04g32790.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Phenotype -- Mutation ? help Back to Top
Source ID
RiceGEOs04g32790
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAL7316420.0AL731642.3 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBb0014D23, complete sequence.
GenBankAP0149600.0AP014960.1 Oryza sativa Japonica Group DNA, chromosome 4, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015635285.10.0ethylene-responsive transcription factor LEP
TrEMBLQ7XL790.0Q7XL79_ORYSJ; OSJNBb0014D23.10 protein
STRINGOS04T0399800-000.0(Oryza sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP18853397
Representative plantOGRP6161718
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G13910.13e-24ERF family protein