PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LOC_Os04g32590.1
Common NameLOC4335704, Os04g0397500, OSJNBa0039C07.7
Organism
Oryza sativa subsp. japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family Trihelix
Protein Properties Length: 330aa    MW: 34882.6 Da    PI: 5.633
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LOC_Os04g32590.1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix86.72.7e-2716101178
          trihelix   1 rWtkqevlaLiearremeerlr.rgk.......lkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessst 78 
                       rWt+qe+l+Lie++r +e r r rg+       ++ ++W++v++++r++g+er+p+qC+++w+nl+++ykki+e+e++ +s+sss+
  LOC_Os04g32590.1  16 RWTRQEILVLIEGKRVVEGRGRgRGRgggggaaAEPTKWAAVAEYCRRHGLERGPVQCRKRWSNLAGDYKKIREWERSLSSPSSSS 101
                       8*******************99533244555559********************************************98888865 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500906.6321681IPR017877Myb-like domain
Gene3DG3DSA:1.10.10.607.6E-51680IPR009057Homeodomain-like
PfamPF138372.1E-111693No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0050777Biological Processnegative regulation of immune response
GO:0071219Biological Processcellular response to molecule of bacterial origin
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0042803Molecular Functionprotein homodimerization activity
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0009037anatomylemma
PO:0001047developmental stagelemma development stage
PO:0007130developmental stagesporophyte reproductive stage
Sequence ? help Back to Top
Protein Sequence    Length: 330 aa     Download sequence    Send to blast
MSGGGEVSGR APRLPRWTRQ EILVLIEGKR VVEGRGRGRG RGGGGGAAAE PTKWAAVAEY  60
CRRHGLERGP VQCRKRWSNL AGDYKKIREW ERSLSSPSSS SAAAGMGKEV SFWAMRNDAR  120
RERRLPGFFD REVYDILEGR GGGNAAAAAA AGKEGEEEKA AVFDSGRAAA GGGGGGGDDG  180
LFSSSEEEED DDEATPPATT PAAAPAPPPA PAPAVPVLTS EKKSDPPRQD ASEQAGTSRA  240
KQPEQIVEDS PAQGAHKRQR SDDASGEAPD LQGQLIEILD RSSRMVAAQL EAQNINCQLD  300
REQRKDQVSS LLGVLGKVAD ALYRIADKM*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Os.53710.0leaf| panicle
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasQ7XLG9
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00288DAPTransfer from AT2G33550Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapLOC_Os04g32590.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Phenotype -- Mutation ? help Back to Top
Source ID
RiceGEOs04g32590
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAL7315910.0AL731591.3 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0039C07, complete sequence.
GenBankAP0149600.0AP014960.1 Oryza sativa Japonica Group DNA, chromosome 4, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015636777.10.0trihelix transcription factor ASR3
TrEMBLQ7XLG90.0Q7XLG9_ORYSJ; OSJNBa0039C07.7 protein
STRINGONIVA04G08920.10.0(Oryza nivara)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP39152648
Representative plantOGRP17471336
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G33550.12e-45Trihelix family protein