PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | LOC_Os04g31900.1 | ||||||||
Common Name | LOC4335664, Os04g0388500, OSNPB_040388500 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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Family | CAMTA | ||||||||
Protein Properties | Length: 1004aa MW: 112062 Da PI: 6.184 | ||||||||
Description | CAMTA family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | CG-1 | 177 | 2.4e-55 | 11 | 127 | 2 | 117 |
CG-1 2 lke.kkrwlkneeiaaiLenfekheltlelktrpksgsliLynrkkvryfrkDGyswkkkkdgktvrEdhekLKvggvevlycyYahseenpt 93 +ke ++rwlk++e++ iL+n+e++ +t e++++p+sgsl+Lynr++ ryfr+DG+ w++kkdg+tv E+he+LKvg+v++l+cyYah+e+np LOC_Os04g31900.1 11 HKEaRSRWLKPSEVYYILQNHERFPITPEPPKKPPSGSLFLYNRRVNRYFRRDGHAWRRKKDGRTVGEAHERLKVGNVDALSCYYAHGEQNPC 103 67779**************************************************************************************** PP CG-1 94 fqrrcywlLeeelekivlvhylev 117 fqrrc+w+Le ++e+ivlv+y+ev LOC_Os04g31900.1 104 FQRRCFWMLEPAYEHIVLVQYREV 127 **********************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51437 | 80.349 | 7 | 133 | IPR005559 | CG-1 DNA-binding domain |
SMART | SM01076 | 3.0E-70 | 10 | 128 | IPR005559 | CG-1 DNA-binding domain |
Pfam | PF03859 | 7.5E-47 | 13 | 126 | IPR005559 | CG-1 DNA-binding domain |
SuperFamily | SSF81296 | 5.6E-16 | 451 | 533 | IPR014756 | Immunoglobulin E-set |
Gene3D | G3DSA:2.60.40.10 | 8.0E-6 | 451 | 541 | IPR013783 | Immunoglobulin-like fold |
Pfam | PF01833 | 3.6E-7 | 451 | 532 | IPR002909 | IPT domain |
SuperFamily | SSF48403 | 1.21E-15 | 482 | 526 | IPR020683 | Ankyrin repeat-containing domain |
SuperFamily | SSF48403 | 1.21E-15 | 646 | 743 | IPR020683 | Ankyrin repeat-containing domain |
Gene3D | G3DSA:1.25.40.20 | 1.0E-15 | 646 | 742 | IPR020683 | Ankyrin repeat-containing domain |
PROSITE profile | PS50297 | 14.769 | 648 | 740 | IPR020683 | Ankyrin repeat-containing domain |
CDD | cd00204 | 1.63E-9 | 653 | 740 | No hit | No description |
Pfam | PF12796 | 4.1E-7 | 664 | 742 | IPR020683 | Ankyrin repeat-containing domain |
SMART | SM00248 | 2.4E-4 | 681 | 710 | IPR002110 | Ankyrin repeat |
PROSITE profile | PS50088 | 10.927 | 681 | 713 | IPR002110 | Ankyrin repeat |
SMART | SM00248 | 1800 | 720 | 749 | IPR002110 | Ankyrin repeat |
SMART | SM00015 | 27 | 801 | 823 | IPR000048 | IQ motif, EF-hand binding site |
PROSITE profile | PS50096 | 7.529 | 802 | 831 | IPR000048 | IQ motif, EF-hand binding site |
SuperFamily | SSF52540 | 1.41E-6 | 857 | 907 | IPR027417 | P-loop containing nucleoside triphosphate hydrolase |
PROSITE profile | PS50096 | 7.95 | 860 | 889 | IPR000048 | IQ motif, EF-hand binding site |
SMART | SM00015 | 19 | 861 | 881 | IPR000048 | IQ motif, EF-hand binding site |
Pfam | PF00612 | 0.022 | 862 | 880 | IPR000048 | IQ motif, EF-hand binding site |
SMART | SM00015 | 1.7E-6 | 882 | 904 | IPR000048 | IQ motif, EF-hand binding site |
PROSITE profile | PS50096 | 10.64 | 883 | 911 | IPR000048 | IQ motif, EF-hand binding site |
Pfam | PF00612 | 1.4E-5 | 884 | 904 | IPR000048 | IQ motif, EF-hand binding site |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0045944 | Biological Process | positive regulation of transcription from RNA polymerase II promoter | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005829 | Cellular Component | cytosol | ||||
GO:0001077 | Molecular Function | transcriptional activator activity, RNA polymerase II core promoter proximal region sequence-specific binding | ||||
GO:0005515 | Molecular Function | protein binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Plant Ontology ? help Back to Top | ||||||
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PO Term | PO Category | PO Description | ||||
PO:0009047 | anatomy | stem | ||||
PO:0007010 | developmental stage | whole plant fruit ripening stage | ||||
PO:0007130 | developmental stage | sporophyte reproductive stage |
Sequence ? help Back to Top |
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Protein Sequence Length: 1004 aa Download sequence Send to blast |
MSLSFDINVL HKEARSRWLK PSEVYYILQN HERFPITPEP PKKPPSGSLF LYNRRVNRYF 60 RRDGHAWRRK KDGRTVGEAH ERLKVGNVDA LSCYYAHGEQ NPCFQRRCFW MLEPAYEHIV 120 LVQYREVGAA EGRYNSASLL NGPTDSLSVL SYPNATYGNQ YLGSTSGVSD GSESLHSNLS 180 SVTEVSSYSA NKDNGILQSI QELSQSTIMG APALGQSSLE QSIEVRWVDN SNSTNKSGLN 240 RALKQIVEQL SLGDDEDDDY IHQAQPFDFI TNIEAPDRQR DASRNVSGGS QAKQIRAEEM 300 QNGLGRGIPS SWEDVLQSSS GFPAPSIYQS TPHYPQNSEY QPPGSLYNSD MQQISAAKRF 360 LLETEDSIDS PSYNYVPREE GNNGTNTLSV HDYSLQSSLN PDWKKTAPLT LQSNLYGSEI 420 PSLLLDHGQF ESLSSGENTR LILGQNPRFS IREVSPEWTY CYEITKVIIT GDFLCDPSSS 480 CWAVMFGDSE VPAEIVQAGV LRCHTPLHSS GKLTICVTSG NREICSEVKD FEFRAKSTAS 540 SFLDISPSSR SLKSSEELLL LAKFVRMLLC ENGSHANSNG DPQSVQCPKL KMNDEHWQRL 600 IDELKGGCEN PLNVSDWIME ELLKSKLQQW LSVKLQGYDG IACSLSKHEQ GIIHLISALG 660 YEWALSSILS ADVGINFRDT NGWTALHWAA YFGREKMVAA LLAAGASAPA VTDPTAQDPV 720 GKTAAFLASE RGHLGLAAYL SEVSLTSYLA SLTIQESDTS KGSAAAEAER AVESISQRNA 780 QLHGGTEDEL SLKDSLAAVR NAAQAAARIQ NAFRAFSFRK RQQKTARLKD EYGMTQEDID 840 ELAAASRSYY QSLLPNGQFY DKAAVSIQKK FKGWKGRRHF LNMRRNAVKI QAHVRGHQVR 900 KKYKTFVSTV SVLEKVILRW RRKGHGLRGF RAEQTAMAEA EEDDEDDDDD DFNDDEAVKV 960 FRRQKVDESV KEAMSRVLSM VDSPEARMQY RRMLEEFRQA TAE* |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Os.11702 | 0.0 | callus| leaf |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | E-value | ||||
GEO | 115458059 | 0.0 | ||||
Expression Atlas | Q0JDP3 | - |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in roots, stems, leaves, flowers and siliques. {ECO:0000269|PubMed:12218065}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator that binds to the DNA consensus sequence 5'-[ACG]CGCG[GTC]-3' (By similarity). Regulates transcriptional activity in response to calcium signals (Probable). Binds calmodulin in a calcium-dependent manner (By similarity). Involved together with CAMTA2 and CAMTA3 in the positive regulation of a general stress response (PubMed:25039701). {ECO:0000250|UniProtKB:Q8GSA7, ECO:0000269|PubMed:25039701, ECO:0000305|PubMed:11925432}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | LOC_Os04g31900.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By heat shock, UVB, salt, wounding, ethylene, methyl jasmonate, abscisic acid, H(2)O(2) and salicylic acid (PubMed:12218065). Induced by cold stress (PubMed:28351986). {ECO:0000269|PubMed:12218065, ECO:0000269|PubMed:28351986}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Phenotype -- Mutation ? help Back to Top | ||||||
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Source | ID | |||||
RiceGE | Os04g31900 |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK122001 | 0.0 | AK122001.1 Oryza sativa Japonica Group cDNA clone:J033110J06, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015635911.1 | 0.0 | calmodulin-binding transcription activator 4 isoform X1 | ||||
Swissprot | Q9FYG2 | 1e-168 | CMTA4_ARATH; Calmodulin-binding transcription activator 4 | ||||
TrEMBL | Q0JDP3 | 0.0 | Q0JDP3_ORYSJ; Os04g0388500 protein | ||||
STRING | OS04T0388500-01 | 0.0 | (Oryza sativa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP6238 | 32 | 41 | Representative plant | OGRP562 | 15 | 65 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G67310.1 | 1e-149 | Calmodulin-binding transcription activator protein with CG-1 and Ankyrin domains |
Link Out ? help Back to Top | |
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Phytozome | LOC_Os04g31900.1 |
Entrez Gene | 4335664 |
Publications ? help Back to Top | |||
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