PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | LOC_Os04g31804.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 250aa MW: 27939.6 Da PI: 7.224 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 40 | 5.2e-13 | 11 | 53 | 2 | 44 |
---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTS CS SRF-TF 2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstg 44 rie+ +r + f kR++g+ KK eEL vLCda v +++s +g LOC_Os04g31804.1 11 RIEDRVRRGICFRKRLAGLEKKVEELAVLCDAHVGFVVLSCSG 53 8**************************************9877 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00432 | 1.9E-11 | 2 | 64 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS50066 | 17.941 | 2 | 53 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 1.57E-16 | 4 | 80 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 9.5E-11 | 4 | 24 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 3.4E-16 | 11 | 53 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 9.5E-11 | 24 | 39 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 9.5E-11 | 39 | 60 | IPR002100 | Transcription factor, MADS-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 250 aa Download sequence Send to blast |
MGRRGRVVLR RIEDRVRRGI CFRKRLAGLE KKVEELAVLC DAHVGFVVLS CSGDDANPHH 60 FAAPATIENI VERYEHSQAA QKGVHGRCIL QKRKSKDFQV LKETIDKGPI NDDMRPIDEK 120 DISTLNMDQI SQIEILLEDE LRWTRARKVV ADRIARLQKK VQKKPATAET ESNSTEMPSD 180 HEKKQVAGGS QQSAEEEEEE MEVVLRHRLS LGTGDRDDGG GGAAEQRHRT TPPPAVDLNV 240 PCRDAGQLQ* |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Os.59051 | 0.0 | callus| leaf |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | LOC_Os04g31804.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Phenotype -- Mutation ? help Back to Top | ||||||
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Source | ID | |||||
RiceGE | Os04g31804 |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK111796 | 1e-109 | AK111796.1 Oryza sativa Japonica Group cDNA clone:J023103N18, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015637115.1 | 0.0 | truncated transcription factor CAULIFLOWER D-like isoform X1 | ||||
TrEMBL | I1PKM9 | 1e-157 | I1PKM9_ORYGL; Uncharacterized protein | ||||
STRING | ORGLA04G0074800.1 | 1e-158 | (Oryza glaberrima) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP15096 | 5 | 5 | Representative plant | OGRP16213 | 2 | 2 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G30260.1 | 8e-19 | AGAMOUS-like 79 |
Link Out ? help Back to Top | |
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Phytozome | LOC_Os04g31804.1 |