PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

LOC_Os04g31730.1

Common Name

LOC4335657, Os04g0386900, OSJNBa0044M19.12

Organism

Oryza sativa subsp. japonica

Taxonomic ID

39947

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa

Family

Protein Properties

Length: 213aa MW: 22326.2 Da PI: 6.2715

Description

B3 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
LOC_Os04g31730.1	genome	MSU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	36.7	7.5e-12	96	176	4	89
E-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-.SSSE CS B3 4 vltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkld.grse 89 ++ +s+v ++v+p++fa + ++ t + +grsW +++ ++++ l++GW++F+ +n+L+ gD +vF+l g + LOC_Os04g31730.1 96 IMCKSHVQPPFQVVVPRSFAPLL---PSRT-TPATLSWRGRSWGMRF--TGGRLIQRLEAGWRGFAVDNDLRLGDGCVFELLvGGGG 176 677899999999******433...3333.44446789****..88888899*********************5423222 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101936	3.34E-15	90	189	IPR015300	DNA-binding pseudobarrel domain
Gene3D	G3DSA:2.40.330.10	4.7E-15	90	190	IPR015300	DNA-binding pseudobarrel domain
CDD	cd10017	1.25E-13	91	189	No hit	No description
PROSITE profile	PS50863	12.492	93	191	IPR003340	B3 DNA binding domain
Pfam	PF02362	2.8E-9	94	176	IPR003340	B3 DNA binding domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Plant Ontology ? help Back to Top
PO Term	PO Category	PO Description
PO:0009009	anatomy	plant embryo
PO:0001081	developmental stage	mature plant embryo stage
PO:0007042	developmental stage	whole plant fruit formation stage

Sequence ? help Back to Top
Protein Sequence Length: 213 aa Download sequence Send to blast
MRAATALPSI PSSSSPSPMA SDPTELRCSS PESSGDAGAE DPAAVDAAEE SGGEGGSGHI 60 AAGTEAAPPR PPEPEPEKVA RHGVLPLLGK PYFTCIMCKS HVQPPFQVVV PRSFAPLLPS 120 RTTPATLSWR GRSWGMRFTG GRLIQRLEAG WRGFAVDNDL RLGDGCVFEL LVGGGGEQER 180 VEFRVQVLRA EIPARIRGRA GGYTSATPIV ID*

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Os.50181	0.0	leaf

Expression -- Microarray ? help Back to Top
Source	ID	E-value
GEO	37989622	0.0
Expression Atlas	Q7XLP4	-

Cis-element ? help Back to Top
Source	Link
PlantRegMap	LOC_Os04g31730.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Phenotype -- Mutation ? help Back to Top
Source	ID
RiceGE	Os04g31730

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK119999	0.0	AK119999.1 Oryza sativa Japonica Group cDNA clone:002-184-H05, full insert sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015635251.1	1e-150	B3 domain-containing protein Os04g0386900
Swissprot	Q7XLP4	1e-151	Y4869_ORYSJ; B3 domain-containing protein Os04g0386900
TrEMBL	A0A0D9ZJY6	1e-149	A0A0D9ZJY6_9ORYZ; Uncharacterized protein
TrEMBL	A0A0E0GZV7	1e-149	A0A0E0GZV7_ORYNI; Uncharacterized protein
TrEMBL	A0A0E0P899	1e-149	A0A0E0P899_ORYRU; Uncharacterized protein
STRING	OGLUM04G10060.1	1e-150	(Oryza glumipatula)
STRING	ORUFI04G11550.1	1e-150	(Oryza rufipogon)
STRING	ONIVA04G08240.1	1e-150	(Oryza nivara)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP8954	35	45
Representative plant	OGRP7665	9	16

Link Out ? help Back to Top
Phytozome	LOC_Os04g31730.1
Entrez Gene	4335657

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764]