PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | LOC_Os04g30890.1 | ||||||||
Common Name | OsJ_14503 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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Family | MYB | ||||||||
Protein Properties | Length: 267aa MW: 28619.4 Da PI: 10.38 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 24.7 | 5.6e-08 | 76 | 117 | 2 | 40 |
SSS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHH CS Myb_DNA-binding 2 grWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqc 40 ++W eE ell +a++++++g +W+ +++ +g+gR+ +++ LOC_Os04g30890.1 76 KPWGREEIELLRKAIQKYPKGtsrRWEVVSEFIGTGRSVEEI 117 68************************************9876 PP | |||||||
2 | Myb_DNA-binding | 22.8 | 2.2e-07 | 209 | 251 | 3 | 43 |
SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksr 43 +W++ + lv+a k ++++ +W+++a+ ++ g+t qck + LOC_Os04g30890.1 209 AWSEAQVLALVQALKAFPKDasqRWERVAAAVP-GKTMVQCKKK 251 7********************************.********76 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50090 | 5.959 | 70 | 125 | IPR017877 | Myb-like domain |
Gene3D | G3DSA:1.10.10.60 | 5.7E-5 | 71 | 117 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 1.4E-5 | 74 | 127 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.0E-6 | 76 | 117 | IPR001005 | SANT/Myb domain |
SuperFamily | SSF46689 | 1.79E-7 | 76 | 119 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 2.46E-5 | 77 | 117 | No hit | No description |
SMART | SM00717 | 3.3E-6 | 206 | 258 | IPR001005 | SANT/Myb domain |
SuperFamily | SSF46689 | 3.21E-8 | 207 | 255 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 5.1E-6 | 209 | 251 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.6E-4 | 209 | 254 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 1.05E-5 | 209 | 251 | No hit | No description |
PROSITE profile | PS50090 | 6.098 | 210 | 251 | IPR017877 | Myb-like domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 267 aa Download sequence Send to blast |
MERLKKLCDS MENKDTTEKA RLLSGALSKE GSSGTSNEGK KIQANGVDGS KAKSTSSGEK 60 VTQGNTLSNY EKKEEKPWGR EEIELLRKAI QKYPKGTSRR WEVVSEFIGT GRSVEEILKA 120 TKTVLLQKPD STKAFDSFLE KRKPAPSIAS PLSVRTETVG LPTEKAAGNA SSKAPAQHAS 180 SKTSDEKAAA PAPAPVSNGT PSGTADPEAW SEAQVLALVQ ALKAFPKDAS QRWERVAAAV 240 PGKTMVQCKK KVAEMQKNFR SKKSAE* |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Os.98415 | 0.0 | stem |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | E-value | ||||
GEO | 37988750 | 0.0 | ||||
Expression Atlas | B9FES7 | - |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | LOC_Os04g30890.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Phenotype -- Mutation ? help Back to Top | ||||||
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Source | ID | |||||
RiceGE | Os04g30890 |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK112087 | 0.0 | AK112087.1 Oryza sativa Japonica Group cDNA clone:002-104-B02, full insert sequence. | |||
GenBank | AL731623 | 0.0 | AL731623.3 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0083D01, complete sequence. | |||
GenBank | AP014960 | 0.0 | AP014960.1 Oryza sativa Japonica Group DNA, chromosome 4, cultivar: Nipponbare, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015633497.1 | 0.0 | dnaJ homolog subfamily C member 2 | ||||
TrEMBL | A0A0P0W9B8 | 0.0 | A0A0P0W9B8_ORYSJ; Os04g0377932 protein | ||||
TrEMBL | B9FES7 | 0.0 | B9FES7_ORYSJ; Uncharacterized protein | ||||
TrEMBL | C7J1P1 | 0.0 | C7J1P1_ORYSJ; Os04g0377932 protein | ||||
STRING | OS04T0377932-00 | 0.0 | (Oryza sativa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP8119 | 34 | 40 | Representative plant | OGRP3823 | 15 | 21 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G11450.1 | 4e-68 | DnaJ domain ;Myb-like DNA-binding domain |
Link Out ? help Back to Top | |
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Phytozome | LOC_Os04g30890.1 |