PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LOC_Os04g30890.1
Common NameOsJ_14503
Organism
Oryza sativa subsp. japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family MYB
Protein Properties Length: 267aa    MW: 28619.4 Da    PI: 10.38
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LOC_Os04g30890.1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding24.75.6e-0876117240
                       SSS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHH CS
   Myb_DNA-binding   2 grWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqc 40 
                       ++W  eE ell +a++++++g   +W+ +++ +g+gR+ +++
  LOC_Os04g30890.1  76 KPWGREEIELLRKAIQKYPKGtsrRWEVVSEFIGTGRSVEEI 117
                       68************************************9876 PP
2Myb_DNA-binding22.82.2e-07209251343
                       SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHH CS
   Myb_DNA-binding   3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksr 43 
                       +W++   + lv+a k ++++   +W+++a+ ++ g+t  qck +
  LOC_Os04g30890.1 209 AWSEAQVLALVQALKAFPKDasqRWERVAAAVP-GKTMVQCKKK 251
                       7********************************.********76 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500905.95970125IPR017877Myb-like domain
Gene3DG3DSA:1.10.10.605.7E-571117IPR009057Homeodomain-like
SMARTSM007171.4E-574127IPR001005SANT/Myb domain
PfamPF002491.0E-676117IPR001005SANT/Myb domain
SuperFamilySSF466891.79E-776119IPR009057Homeodomain-like
CDDcd001672.46E-577117No hitNo description
SMARTSM007173.3E-6206258IPR001005SANT/Myb domain
SuperFamilySSF466893.21E-8207255IPR009057Homeodomain-like
PfamPF002495.1E-6209251IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.6E-4209254IPR009057Homeodomain-like
CDDcd001671.05E-5209251No hitNo description
PROSITE profilePS500906.098210251IPR017877Myb-like domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 267 aa     Download sequence    Send to blast
MERLKKLCDS MENKDTTEKA RLLSGALSKE GSSGTSNEGK KIQANGVDGS KAKSTSSGEK  60
VTQGNTLSNY EKKEEKPWGR EEIELLRKAI QKYPKGTSRR WEVVSEFIGT GRSVEEILKA  120
TKTVLLQKPD STKAFDSFLE KRKPAPSIAS PLSVRTETVG LPTEKAAGNA SSKAPAQHAS  180
SKTSDEKAAA PAPAPVSNGT PSGTADPEAW SEAQVLALVQ ALKAFPKDAS QRWERVAAAV  240
PGKTMVQCKK KVAEMQKNFR SKKSAE*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Os.984150.0stem
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO379887500.0
Expression AtlasB9FES7-
Cis-element ? help Back to Top
SourceLink
PlantRegMapLOC_Os04g30890.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Phenotype -- Mutation ? help Back to Top
Source ID
RiceGEOs04g30890
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1120870.0AK112087.1 Oryza sativa Japonica Group cDNA clone:002-104-B02, full insert sequence.
GenBankAL7316230.0AL731623.3 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0083D01, complete sequence.
GenBankAP0149600.0AP014960.1 Oryza sativa Japonica Group DNA, chromosome 4, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015633497.10.0dnaJ homolog subfamily C member 2
TrEMBLA0A0P0W9B80.0A0A0P0W9B8_ORYSJ; Os04g0377932 protein
TrEMBLB9FES70.0B9FES7_ORYSJ; Uncharacterized protein
TrEMBLC7J1P10.0C7J1P1_ORYSJ; Os04g0377932 protein
STRINGOS04T0377932-000.0(Oryza sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP81193440
Representative plantOGRP38231521
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G11450.14e-68DnaJ domain ;Myb-like DNA-binding domain