PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LOC_Os04g30870.1
Common NameOSJNBa0083D01.8
Organism
Oryza sativa subsp. japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family FAR1
Protein Properties Length: 1162aa    MW: 134332 Da    PI: 8.6671
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LOC_Os04g30870.1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR176.26.4e-24501598190
              FAR1   1 kfYneYAkevGFsvrkskskks...krngeitkrtfvCskegkreeekkk......tekerrtraetrtgCkaklkvkkekdgkwevtklele 84 
                       +f+n+YA  +GFsv+++++++s   krnge+++ tf+C+++gk+++e+++       + er++++ + t+C++ l+++++ +  w++t+++l+
  LOC_Os04g30870.1 501 DFFNFYALLAGFSVVIAHNYHStskKRNGEVIRVTFKCNRHGKAKSESQEeeteetVVAERNSNEIKATSCNCALVISER-NLIWRITRVNLD 592
                       6********************99999*******************99999899888888999*****************9.************ PP

              FAR1  85 HnHela 90 
                       Hn +++
  LOC_Os04g30870.1 593 HNYKMS 598
                       **9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031012.3E-23501599IPR004330FAR1 DNA binding domain
PfamPF105516.1E-24719796IPR018289MULE transposase domain
PROSITE profilePS5096610.522906942IPR007527Zinc finger, SWIM-type
PfamPF044341.6E-5907942IPR007527Zinc finger, SWIM-type
SMARTSM005752.9E-6917944IPR006564Zinc finger, PMZ-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 1162 aa     Download sequence    Send to blast
MELEEEKDPP KHQSKIKMNS AEIKKRKIGL GKDQGSEKKE MSGKNIKYIK ETGTKGQSKE  60
LQKEESKSRK STKDKSKKNK VPANAEEFHK KYTTKVIRKE SRTDSSSTEQ VIGTSSIQEM  120
ETNEQVKSKD TSKAIAERIH KEYTTKVNKH ESRTVSNSKS KEQLIRTSNI EEKQKRKQII  180
SENNSKDMTQ VQANAEEFHK EYTTKVNRQE RITDSSSIEQ VIGTSSIQEM EANEKVKSKD  240
TSKGNKDNGQ SGRTISLDTK KDVNLKYKDD RLILGKAKIF SKYHSEITYY NFNFYEAGRS  300
ISLDTGISNE LSQEEISIND KMKLNREKTN SSDEYNNCTL NDEWSLLGAQ NFSYTSLMEQ  360
IISSQPSISE VQQEISTESN FVATPRAFQN SMILTTSRTE DIPFDMDYAD MDYADTNQVE  420
DEDLEDNELE NWNLDMFNLS NGQNVQNSAD NSTEIGNQAT TNVDTVEQEQ EEATKGNNAA  480
IDAKYIPRVD VQFKSIKEAH DFFNFYALLA GFSVVIAHNY HSTSKKRNGE VIRVTFKCNR  540
HGKAKSESQE EETEETVVAE RNSNEIKATS CNCALVISER NLIWRITRVN LDHNYKMSPR  600
DEVRFLKSHK NMTTEEKMLI RTLKECNIPT RHMIVILSTL RGGLTSLPYT KKDVSNVRTC  660
INKETSSNDM MQVLQFFRKK KEKDPKFFYE FDLDENKKVT NLFWTDGRSI DWYEKYGDVV  720
SFDTTYFTNR YNLPFAPFVG ISGHGNTIVF GCAFLHDETA ETFKWLFITF LKAMSKKAPK  780
TIITDQDGAM STALSEGTNS RFKKDVGPQY SITSFLIEYA RLMDTIQNLE QLDDHNSRTK  840
RPSKLWSHYY IEYQAVKLYN SKIFKKFQVE LKRTTRLQLI EVEKLKTYEV FLALNQKIKV  900
VRRRKYLVIV DSEKEEYTCV CSKFEKDGLL CSHILKIMLH LNIMKIPEKY IIDRWRKKDY  960
KEKSDFEDRI IPLSESSVLR FNILSRKCAE IASQGSKSID SFQFAVDQID KLEKELISMN  1020
SEQRTKQQME IDKTDTTNGE VIEETEQNNE EIMIDPDIAK SKGRPSQRYK SFREELQSKE  1080
VYHCSHCQRT DHTFPTCPLK HIEFDLPRKK IRKTKNTSQK KAEEEQTDGS KKTNKGKKQE  1140
ATTQVLVEQK GTKKRKTDGS S*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1677682RKKKEK
2898904KVVRRRK
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Os.787600.0callus
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO2976012660.0
Expression AtlasQ7XVF0-
Cis-element ? help Back to Top
SourceLink
PlantRegMapLOC_Os04g30870.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Phenotype -- Mutation ? help Back to Top
Source ID
RiceGEOs04g30870
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAL7316230.0AL731623.3 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0083D01, complete sequence.
GenBankAP0149600.0AP014960.1 Oryza sativa Japonica Group DNA, chromosome 4, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLQ7XVF00.0Q7XVF0_ORYSJ; OSJNBa0083D01.8 protein
STRINGOB09G10870.11e-166(Oryza brachyantha)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP1533535
Representative plantOGRP3012351
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38180.18e-48FAR1-related sequence 5