PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | LOC_Os04g28580.1 | ||||||||
Common Name | OSJNBb0002N06.8 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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Family | FAR1 | ||||||||
Protein Properties | Length: 886aa MW: 101579 Da PI: 8.5691 | ||||||||
Description | FAR1 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | FAR1 | 55.8 | 1.5e-17 | 138 | 218 | 1 | 90 |
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek.dgkwevtkleleHnHela 90 +fYn YA + GF +r +k + + ++++ t+r+ +Cs +g++ ++kk + r+gC a++k++++ + w vtk+++ HnH++ LOC_Os04g28580.1 138 NFYNVYAVSKGFGIRLDKDRMN-TEKQRTMRQICCSHQGRNPKTKKP---------SVRIGCPAMMKINRSGaGSGWSVTKVVSTHNHPMK 218 6****************99998.566699**********99887655.........9**************99999************986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03101 | 1.9E-13 | 138 | 218 | IPR004330 | FAR1 DNA binding domain |
Pfam | PF10551 | 2.3E-33 | 340 | 433 | IPR018289 | MULE transposase domain |
Pfam | PF04434 | 1.3E-5 | 622 | 655 | IPR007527 | Zinc finger, SWIM-type |
PROSITE profile | PS50966 | 10.299 | 622 | 658 | IPR007527 | Zinc finger, SWIM-type |
SMART | SM00575 | 4.0E-7 | 633 | 660 | IPR006564 | Zinc finger, PMZ-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 886 aa Download sequence Send to blast |
MDKQVKNHRP SVGTDGSREI LMDERNPTMD IVDGISQSVH DSQPDGGQSS RVAMEEDVPS 60 RVGSHDSGHG IPETRNLVPS LDWTEGNPYE KEGAGIPMER MVVDNVDSSA VIPPEYADPQ 120 ILTPMLGQRF KTERDAYNFY NVYAVSKGFG IRLDKDRMNT EKQRTMRQIC CSHQGRNPKT 180 KKPSVRIGCP AMMKINRSGA GSGWSVTKVV STHNHPMKKS VGVTKNYQSH NQIDEGTRGI 240 IEEMVDSSMS LTNMYGMLSG MHGGPSMVPF TRKAMDRLAY AIRRDESSDD MQKTLDVLKD 300 LQKRSKNFFY SIQVDEACRV KNIFWSHAVS RLNFEHFGDV ITFDTTYKTN KYNMPFAPFV 360 GVNNHFQSTF FGCALLREET EESFTWLFNT FKECMNGKVP IGILTDNCPS MAAAIRTVFP 420 NTIHRVCKWH VLKKAKEFMG NIYSKRHTFK KAFHKVLTQT LTEEEFVAAW HKLIRDYNLE 480 KSVYLRHIWD IRRKWAFVYF SHRFFAGMTT TQRSESANHV FKMFVSPSSS MNGFVKRYDR 540 FFNEKLQKED SEEFQTSNDK VEIKTRSPIE IHASQVYTRA VFQLFSEELT DSLSYMVKPG 600 EDESTVQVVR MNSQESFLRK EYQVSCDLER EEFSCVCKMF EHKGILCSHI LRVLVQYGLS 660 RIPERYILKR WTKDARDTIP PHLHGYKDDV DASQSRSYRH VMLNRKTVEV AKIANKDVQT 720 FKMAMTVMNK LLEDMKNQLS LDDGDNSREA PKRAARHKSR STVLTEDGNE EVGGGDEDSE 780 YDVPSEDEGG NLTADILPPL KKKSRGRPKV NRYKSGGEVA SLKRRKEVGI EKKNTTNECE 840 SVEEENQVID HEDEVPFPRR FCHTCHEAGH NSRTCGRTST YKRKL* |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Os.91121 | 0.0 | panicle |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | E-value | ||||
GEO | 297602529 | 0.0 | ||||
Expression Atlas | Q7XRZ8 | - |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | LOC_Os04g28580.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Phenotype -- Mutation ? help Back to Top | ||||||
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Source | ID | |||||
RiceGE | Os04g28580 |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AL662991 | 0.0 | AL662991.3 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBb0002N06, complete sequence. | |||
GenBank | AP014960 | 0.0 | AP014960.1 Oryza sativa Japonica Group DNA, chromosome 4, cultivar: Nipponbare, complete sequence. | |||
GenBank | CR855119 | 0.0 | CR855119.1 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSIGBa0092G14, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025880431.1 | 0.0 | protein FAR1-RELATED SEQUENCE 5 | ||||
TrEMBL | Q7XRZ8 | 0.0 | Q7XRZ8_ORYSJ; OSJNBb0002N06.8 protein | ||||
STRING | OS04T0354200-00 | 0.0 | (Oryza sativa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP18 | 32 | 967 | Representative plant | OGRP30 | 12 | 351 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G38180.1 | 1e-116 | FAR1-related sequence 5 |
Link Out ? help Back to Top | |
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Phytozome | LOC_Os04g28580.1 |