PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | LOC_Os04g28280.1 | ||||||||
Common Name | LOC4335553, Os04g0350700, OSJNBa0038P21.14, OSNPB_040350700 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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Family | bHLH | ||||||||
Protein Properties | Length: 264aa MW: 28146.6 Da PI: 8.2454 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 31.7 | 2.7e-10 | 91 | 138 | 4 | 55 |
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +h+ +Er RR+ri +++ L++l+P + +k Ka +L + ++Y++sLq LOC_Os04g28280.1 91 SHSLAERVRRERISERMKLLQSLVPGC----NKITGKALMLDEIINYVQSLQ 138 8**************************....999*****************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF47459 | 2.62E-17 | 85 | 156 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 1.21E-11 | 85 | 142 | No hit | No description |
PROSITE profile | PS50888 | 15.612 | 87 | 137 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 1.8E-16 | 87 | 155 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 1.6E-7 | 91 | 138 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 1.0E-9 | 93 | 143 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Plant Ontology ? help Back to Top | ||||||
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PO Term | PO Category | PO Description | ||||
PO:0009037 | anatomy | lemma | ||||
PO:0001047 | developmental stage | lemma development stage | ||||
PO:0007130 | developmental stage | sporophyte reproductive stage |
Sequence ? help Back to Top |
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Protein Sequence Length: 264 aa Download sequence Send to blast |
MNPTTAAAAD QPSKPSAAAA ARKRKSSAKP KASSSSLPTA TATTNASPKR SKVAAGAGDD 60 GDADADAAEE KPEPAKDYIH VRARRGQATD SHSLAERVRR ERISERMKLL QSLVPGCNKI 120 TGKALMLDEI INYVQSLQRQ VEFLSMKLAT MNPQLDFDSH YMPSKDMSHM PVPAYPSSDP 180 TTTTAFSYTG SPATADPFTV YNCWELDLHT AMQMGATTGL SQDGPIATMA PSPSPLPHHP 240 PLHGFYGGQQ QQGTTVNHMK AEP* |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Os.87970 | 0.0 | panicle |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | E-value | ||||
GEO | 32993814 | 0.0 | ||||
Expression Atlas | Q0JDZ1 | - |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed constitutively in roots, leaves, stems, and flowers. {ECO:0000269|PubMed:12679534}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | LOC_Os04g28280.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Phenotype -- Mutation ? help Back to Top | ||||||
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Source | ID | |||||
RiceGE | Os04g28280 |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK108605 | 0.0 | AK108605.1 Oryza sativa Japonica Group cDNA clone:002-146-G10, full insert sequence. | |||
GenBank | FO681475 | 0.0 | FO681475.1 Oryza sativa ssp indica cv (Guangluai4) Awn-1(An-1) full-length cDNA sequence: OS_Guangluai4_cDNA_An-1, PCR product. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015635665.2 | 0.0 | LOW QUALITY PROTEIN: transcription factor bHLH62 | ||||
Swissprot | Q9SRT2 | 1e-53 | BH062_ARATH; Transcription factor bHLH62 | ||||
TrEMBL | Q0JDZ1 | 0.0 | Q0JDZ1_ORYSJ; OSJNBa0038P21.14 protein | ||||
STRING | OS04T0350700-01 | 0.0 | (Oryza sativa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP12547 | 28 | 35 | Representative plant | OGRP58 | 16 | 313 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G07340.1 | 4e-48 | bHLH family protein |
Link Out ? help Back to Top | |
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Phytozome | LOC_Os04g28280.1 |
Entrez Gene | 4335553 |
Publications ? help Back to Top | |||
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