PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | LOC_Os04g28160.1 | ||||||||
Common Name | Os04g0349100, OsJ_14368, OSJNBa0038P21.2, RR28 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
|
||||||||
Family | ARR-B | ||||||||
Protein Properties | Length: 381aa MW: 42765.4 Da PI: 5.2645 | ||||||||
Description | ARR-B family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 27.8 | 5.5e-09 | 173 | 219 | 4 | 55 |
G2-like 4 lrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 l Wtp L ++F++a+e LG + + l +m+v+ + ++++ HLQk+Rl LOC_Os04g28160.1 173 LMWTPHLQKKFLHALEILG-EGQ----ISLMIMDVDNIDRKQISTHLQKHRL 219 78****************5.542....34789*******************8 PP | |||||||
2 | Response_reg | 47.1 | 1.3e-16 | 15 | 122 | 2 | 107 |
EEESSSHHHHHHHHHHHH.HTTCEEEEEESSHHHHHHHHHHHH..ESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTTHHHHHHHHH CS Response_reg 2 livdDeplvrellrqale.kegyeevaeaddgeealellkekd..pDlillDiempgmdGlellkeireeepklpiivvtahgeeedalealk 91 +++d+++ ++ ++++ + ++ v++++++ +al+ l+++ ++l+l D++m +m+G+e+lk re ++++++i+++++ + +++++++ LOC_Os04g28160.1 15 MVIDEDKCHADSTCSMICtQLNF-CVTVFTSPIKALDFLQNQAegVHLVLADVQMEEMNGFEFLKVARELHKSIQVIMMSTETTIYTMKRCVQ 106 6776666666665555554999*.***************999999************************************************ PP TTESEEEESS--HHHH CS Response_reg 92 aGakdflsKpfdpeel 107 +Ga+ + Kp d + LOC_Os04g28160.1 107 LGAQILVKKPLDVVTI 122 **********987655 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF52172 | 7.97E-20 | 12 | 129 | IPR011006 | CheY-like superfamily |
SMART | SM00448 | 1.5E-10 | 12 | 126 | IPR001789 | Signal transduction response regulator, receiver domain |
PROSITE profile | PS50110 | 23.502 | 13 | 130 | IPR001789 | Signal transduction response regulator, receiver domain |
Gene3D | G3DSA:3.40.50.2300 | 1.4E-20 | 14 | 129 | No hit | No description |
CDD | cd00156 | 4.07E-14 | 15 | 129 | No hit | No description |
Pfam | PF00072 | 9.9E-15 | 15 | 122 | IPR001789 | Signal transduction response regulator, receiver domain |
SuperFamily | SSF46689 | 3.58E-10 | 167 | 223 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 2.3E-10 | 168 | 223 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 1.6E-8 | 173 | 220 | IPR006447 | Myb domain, plants |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0000160 | Biological Process | phosphorelay signal transduction system | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009736 | Biological Process | cytokinin-activated signaling pathway | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 381 aa Download sequence Send to blast |
MAQNEGIPNG TLSAMVIDED KCHADSTCSM ICTQLNFCVT VFTSPIKALD FLQNQAEGVH 60 LVLADVQMEE MNGFEFLKVA RELHKSIQVI MMSTETTIYT MKRCVQLGAQ ILVKKPLDVV 120 TIQNLWQHLD IKVLKMEKIK DMLQGVGDKS TCANEMNSFP ENQKDGTKRK YYLMWTPHLQ 180 KKFLHALEIL GEGQISLMIM DVDNIDRKQI STHLQKHRLQ LKKKLSKASF TKGSNEDTSN 240 PSAKNHLTCR TMTLQPHPYT NQPAETTMQI HSEDVEHDDV YDAMRRALQD GTAFDESKYS 300 SDPFSNEDED VVGDGYADKA NAIDSSGDHY QVAVVLTTPH NVDYTQEIMN KVTTSDDVQV 360 TRGGKATVSR LVDYSDSDSD * |
Expression -- UniGene ? help Back to Top | ||||||
---|---|---|---|---|---|---|
UniGene ID | E-value | Expressed in | ||||
Os.23483 | 0.0 | panicle |
Expression -- Microarray ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | ID | |||||
Expression Atlas | Q7XKS9 |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Transcriptional activator that binds specific DNA sequence. Functions as a response regulator involved in His-to-Asp phosphorelay signal transduction system. Phosphorylation of the Asp residue in the receiver domain activates the ability of the protein to promote the transcription of target genes. May directly activate some type-A response regulators in response to cytokinins. {ECO:0000250|UniProtKB:Q940D0}. |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | LOC_Os04g28160.1 |
Phenotype -- Disruption Phenotype ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | DISRUPTION PHENOTYPE: Dwarf, narrow leaf, low tillering and altered kernel color. {ECO:0000269|PubMed:16891544}. |
Phenotype -- Mutation ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | ID | |||||
RiceGE | Os04g28160 |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | AP014960 | 0.0 | AP014960.1 Oryza sativa Japonica Group DNA, chromosome 4, cultivar: Nipponbare, complete sequence. | |||
GenBank | CP012612 | 0.0 | CP012612.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 4 sequence. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_015691407.1 | 1e-167 | PREDICTED: two-component response regulator ORR29-like | ||||
Swissprot | Q7XKS9 | 0.0 | ORR28_ORYSJ; Two-component response regulator ORR28 | ||||
TrEMBL | A0A0E0P7N9 | 0.0 | A0A0E0P7N9_ORYRU; Uncharacterized protein | ||||
STRING | ORUFI04G09650.1 | 0.0 | (Oryza rufipogon) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP5920 | 23 | 45 | Representative plant | OGRP11178 | 4 | 5 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT4G18020.5 | 5e-13 | ARR-B family protein |
Link Out ? help Back to Top | |
---|---|
Phytozome | LOC_Os04g28160.1 |
Publications ? help Back to Top | |||
---|---|---|---|
|