PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | LOC_Os04g28000.1 | ||||||||
Common Name | Os04g0347400, Os04g0347500, OsJ_14357, OSJNBa0020I02.7 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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Family | B3 | ||||||||
Protein Properties | Length: 251aa MW: 28033.3 Da PI: 9.8435 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 73.4 | 2.6e-23 | 142 | 236 | 1 | 86 |
EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS.......-EEEEEE..EEETTE..EEE-TTHHHHHHHHT--TT-EEEEEE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesg.......rsWevkliyrkksgr..yvltkGWkeFvkangLkegDfvvFkl 84 ++k+++++++l++g+++lp f++++g+++e+++tl++++++g rsWev ++++k++ + +l +GWk+F++angL +gD+++F++ LOC_Os04g28000.1 142 WIKKEISNYMLENGNISLPGIFCKSIGLVEETTITLMINSSRGrssssssRSWEVACSVNKNGYGccNLLPSGWKRFCQANGLLVGDVCTFSV 234 789******************************************************99666666779***********************96 PP -S CS B3 85 dg 86 ++ LOC_Os04g28000.1 235 VE 236 43 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50863 | 11.66 | 1 | 62 | IPR003340 | B3 DNA binding domain |
CDD | cd10017 | 5.93E-8 | 4 | 59 | No hit | No description |
SuperFamily | SSF101936 | 1.06E-11 | 4 | 64 | IPR015300 | DNA-binding pseudobarrel domain |
Gene3D | G3DSA:2.40.330.10 | 2.4E-10 | 6 | 64 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 1.59E-15 | 137 | 246 | IPR015300 | DNA-binding pseudobarrel domain |
Gene3D | G3DSA:2.40.330.10 | 3.4E-17 | 138 | 246 | IPR015300 | DNA-binding pseudobarrel domain |
Pfam | PF02362 | 1.0E-21 | 142 | 246 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 11.575 | 142 | 248 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 2.0E-6 | 143 | 248 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 251 aa Download sequence Send to blast |
MASILSPLGK FWRIELEKDE LGMFFKGGWL QFLSFHGISP GDVVLLRHEG NLVFKIKVFG 60 INGCKKDLKT KDDITIQQSA RNQHETPSFS TRKCNKNSRF GEDCKNQLQE IPCSIKGSRK 120 KGRETKRPKK SKSIYEIGPP SWIKKEISNY MLENGNISLP GIFCKSIGLV EETTITLMIN 180 SSRGRSSSSS SRSWEVACSV NKNGYGCCNL LPSGWKRFCQ ANGLLVGDVC TFSVVEATLW 240 HVAIDRVERS * |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 119 | 128 | KKGRETKRPK |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | |||||
Expression Atlas | Q7XS74 |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | LOC_Os04g28000.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Phenotype -- Mutation ? help Back to Top | ||||||
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Source | ID | |||||
RiceGE | Os04g28000 |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AL662963 | 1e-156 | AL662963.3 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0020I02, complete sequence. | |||
GenBank | AP014960 | 1e-156 | AP014960.1 Oryza sativa Japonica Group DNA, chromosome 4, cultivar: Nipponbare, complete sequence. | |||
GenBank | CP012612 | 1e-156 | CP012612.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 4 sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025880727.1 | 1e-165 | LOW QUALITY PROTEIN: putative B3 domain-containing protein Os04g0347400 | ||||
Swissprot | Q7XS74 | 0.0 | Y4474_ORYSJ; Putative B3 domain-containing protein Os04g0347400 | ||||
TrEMBL | B8ASH1 | 0.0 | B8ASH1_ORYSI; Uncharacterized protein | ||||
STRING | ORUFI04G09430.1 | 0.0 | (Oryza rufipogon) | ||||
STRING | ONIVA04G06710.1 | 0.0 | (Oryza nivara) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP425 | 35 | 187 | Representative plant | OGRP10106 | 4 | 10 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G26680.1 | 6e-10 | B3 family protein |
Link Out ? help Back to Top | |
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Phytozome | LOC_Os04g28000.1 |